Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1464 ATGGCCTCCGATGCACATGGCTCCCGTCGTAAGCACCGGCGCTCATCTTCTCCCGAAGAAGTCGAGCGATCTTCGAAGCGTCATAAGCACCGCCACTATGGGCACCGCCATCATCGGCACCGCCACGGTAGCAGGAAACACGAAGAAGAAGTTGAACTTGATTGCGAAACTGTTGATACGGTTCCTTCTCCAACTCTTGCTCCTAATTTTGATCCGAAGATCCCTAGGCCTGATGATGATGTGGAGGAGGGGGAGATTCTCGAAGAGGAGGTTTCTGGTGGCCGAGATGGTGAGATTGGAAAAAATCCTACGGAGTCTGATGCTGAGTCTGGTGAAATTATGGCCGCGGGAGGTCGAGGTATTCCATCTGATAATTCAAATCCGGTACCTTTCACTGAAGAGATGTTGCACCAGAAAGATGCCATTCCTTCTAAAGAGACTGTAGGGATCAATGCTAAAGGTTCACAAACTAATAATGAGGATATCAGCAACGGCAGATTTGTTAGTCCAGTATTGGATGGAGAAGATGATACCAGCCATCAGAGAATCACTGGTTATAGTAGAAATGAAGTTGATGGTTCTTTTACTGATTCAAGTGCTGAGTCTCTAGATGGTAAGCATGCTAGAGCTAGTTCAGACGGTTTGGGCAATGGGTATTTGGATCGTAAATCTTCTAAAGAGGATAAATGGCAGCATGGGGAGCTCGGATGTTCTAAAGGAAATGAGAAGCTGAAAGGTGACTATGATAACGAAGAACTGGAGGTTAATGGAGGCAAAGTAAGGATTCATAGAAGGAACTCCTCCCCTGAAAGTGGAGGCAGCAAGCATAGGACCAGGGAAAGCTCACCTAATCATAGATTTAGGAGTCAATCCAGATCAAGTGGTCATACTCATAGTGTAATGGAAGAATATGCTTATTCCAGGAGAAGGAATGATGAGGAAAGAAGGGAGTGTAGTTCCAGTTATTACAGTCGGGAGGCCCGAGATAGAGATAGGAGCAAGGACAGGGATGTGGATAGGTACCTAAGAAGGGAAAAGGAACGAGAAAGGAGCCGAAATAGGGAGGATGACCGTGTGCATAGGAGGGAAAAAGAACATGAAGGGAGTCATGAGAAGGATAGAAGGGATGTGGAAAAAGATAGGAGCAGGGGAAGAGAGGTGGACAGGGATAGAAGAAGAGAAAAGGAGCGAGATAGAGATAGGAGCTGGGAGATAGGGGGTGAGCGGGATAGAAGTGATAGGGGAAGAGGGAGGAGCAGGGACAGAGCAAGGGTTGGAGAGAGAGATAGAGTCCGGGAGAATGAAAGGGATGATAAGCATCGAGAAAGATATAAGATTAAGGAGAGGGAGAGGCATAAGGATAGAAACACTCTTGATAAAGATAAAAATATGGGTTATGGGCATGGTCATGAGAGCCGGGACAGAGATATACGCCCTAGGCATTCTAGACATGAAGAAGCAGAAAGCTATCGGGGGAGACAGAGAAACTCTGAGTCTGTGAAAGTTGATAACCCTATGGACAGAGGTGAGGATGAACAAGATGACTTAGATGAGACTGTTACGTTACAATTTGCTGAACAAGAAGAGGAAGATCTCAATAGAATTAAGGAGGAGAGTAGAAGGAGGAGGGAAGCAATCTTAGAGAAATATAAAAAGCAGCAACCACAGCAGTATCAACAAGCAGAGCAAACTTCTGAAAATAAAGAAAAAGATAAGGATCCTTTGAATATTCTGGCTGCTGTTTCGGAAGCTCCTGATGCTAAGAATGATGGAGTTGATGCTTTTGAAGGGGAACCATCTTTCACTGTTGGTAAATCTCCTCCTCGAGAAAATGGAAATGATACATCTGAAAAGATCCCTGGTGTTGCTAGGGGCTTGGGAGAGGGCACTCCAAAGAGTGAAAGATCCGATGACAAGTTTTGTGATGACATATTTGGTGAGACACCAACAGGAGTTCGCAAATCGGGCAAAGGGGATGGATTGCGTGTTGACAGGGGCGGATTGCATGACAATTGGGATGATGCAGAGGGGTATTACAGCTATCGTTTTGGTGAAATACTTGATGGTCGATATGAAGTTATTGCAGCTCATGGTAGAGGTGTCTTTTCAACAGTTGTTCGTGCAAAGAATCTCAAGGCTGGTAATGTTGAGCCTGAAGAAGTAGCTATAAAAATTATTCGCAATAATGACACTATGTACAAGGCTGGTATGGATGAGTTGGTCATACTAAAGAAATTAGTAGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCGAGTTTTAAGTACAGGAATCACCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCGTACGCGAAACAACTTTTTATAGCATTGAAGCATCTTCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGACAATATGTTGGTGAATGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCTATGTTTGCTGGAAAGAATGAAGTTACGCCATACCTTGTGAGTCGTTTTTATCGTGCCCCTGAAATAATACTTGGCTTGCCATATGATCATCCGTTGGATGTCTGGTCTGTAGGCTGTTGTTTGTATGAACTCTATAGTGGAAAAGTTCTTTTCCCAGGTTCTACTAACAATGACATGCTGCGGCTTCACATGGAATTGAAGGGCCCTTTTCCTAAGAAGATGCTTCGCAAGGGAGCGTTTATTGATCAGCATTTTGACCAGGACTTGAATTTTCTTGCTACAGAAGAGGATCCAGTGACGAAGAAGGCTATAAAGCGGTTGATTCTCAACATAAAGCTCAAAGATATTGGAACTATCATTGCTGGTTCTCCTGGAGAGGATCCAAAGATGTTAGCCAATTTCAAAGATCTTCTGGACAAGGTTTTTGTCCTGGATCCAGAGAAGAGGTTGACAGTCTCACAAGCATTAAGCCACCCATTCATCACTGGCAAGTGA 3030 0.4396 MASDAHGSRRKHRRSSSPEEVERSSKRHKHRHYGHRHHRHRHGSRKHEEEVELDCETVDTVPSPTLAPNFDPKIPRPDDDVEEGEILEEEVSGGRDGEIGKNPTESDAESGEIMAAGGRGIPSDNSNPVPFTEEMLHQKDAIPSKETVGINAKGSQTNNEDISNGRFVSPVLDGEDDTSHQRITGYSRNEVDGSFTDSSAESLDGKHARASSDGLGNGYLDRKSSKEDKWQHGELGCSKGNEKLKGDYDNEELEVNGGKVRIHRRNSSPESGGSKHRTRESSPNHRFRSQSRSSGHTHSVMEEYAYSRRRNDEERRECSSSYYSREARDRDRSKDRDVDRYLRREKERERSRNREDDRVHRREKEHEGSHEKDRRDVEKDRSRGREVDRDRRREKERDRDRSWEIGGERDRSDRGRGRSRDRARVGERDRVRENERDDKHRERYKIKERERHKDRNTLDKDKNMGYGHGHESRDRDIRPRHSRHEEAESYRGRQRNSESVKVDNPMDRGEDEQDDLDETVTLQFAEQEEEDLNRIKEESRRRREAILEKYKKQQPQQYQQAEQTSENKEKDKDPLNILAAVSEAPDAKNDGVDAFEGEPSFTVGKSPPRENGNDTSEKIPGVARGLGEGTPKSERSDDKFCDDIFGETPTGVRKSGKGDGLRVDRGGLHDNWDDAEGYYSYRFGEILDGRYEVIAAHGRGVFSTVVRAKNLKAGNVEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPLDVWSVGCCLYELYSGKVLFPGSTNNDMLRLHMELKGPFPKKMLRKGAFIDQHFDQDLNFLATEEDPVTKKAIKRLILNIKLKDIGTIIAGSPGEDPKMLANFKDLLDKVFVLDPEKRLTVSQALSHPFITGK 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1464 1009 FunFam Serine/threonine-protein kinase PRP4 homolog 751 1007 - -
Lele52g1464 1009 MobiDBLite consensus disorder prediction 220 286 - -
Lele52g1464 1009 Pfam Protein kinase domain 692 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1464 1009 Gene3D Transferase(Phosphotransferase) domain 1 751 1007 - -
Lele52g1464 1009 MobiDBLite consensus disorder prediction 149 165 - -
Lele52g1464 1009 MobiDBLite consensus disorder prediction 527 550 - -
Lele52g1464 1009 MobiDBLite consensus disorder prediction 1 658 - -
Lele52g1464 1009 Gene3D Phosphorylase Kinase; domain 1 662 750 - -
Lele52g1464 1009 MobiDBLite consensus disorder prediction 27 44 - -
Lele52g1464 1009 MobiDBLite consensus disorder prediction 184 201 - -
Lele52g1464 1009 SMART serkin_6 691 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1464 1009 MobiDBLite consensus disorder prediction 88 105 - -
Lele52g1464 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Lele52g1464 1009 MobiDBLite consensus disorder prediction 302 508 - -
Lele52g1464 1009 Coils Coil 522 545 - -
Lele52g1464 1009 MobiDBLite consensus disorder prediction 509 525 - -
Lele52g1464 1009 MobiDBLite consensus disorder prediction 630 644 - -
Lele52g1464 1009 FunFam serine/threonine-protein kinase PRP4 homolog 662 750 - -
Lele52g1464 1009 SUPERFAMILY Protein kinase-like (PK-like) 678 1008 IPR011009 -
Lele52g1464 1009 ProSiteProfiles Protein kinase domain profile. 691 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1464 1009 PANTHER DUAL SPECIFICITY PROTEIN KINASE 352 1007 - -
Lele52g1464 1009 CDD STKc_PRP4 690 1006 IPR044092 GO:0004674|GO:0006468|GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1464 Lele-ChrLele52 18631840 18638403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1464 644 1008 MAP Kinase Gene Family AT2G18170 30.709 1.75e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Lele52g1464 Pkinase 6.2e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1464 52 18631840 18638403 Lele52g1464 52 18631840 18638403 ECH
Lele49g1317 49 9010375 9016985 Lele52g1464 52 18631840 18638403 hybridization
Lele50g1511 50 20251686 20258210 Lele52g1464 52 18631840 18638403 hybridization