Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1451 ATGCAGCGTCAGAAAATGGGGGTTCGAGAATACATCGAAGCGTTAGAAGAAGAACGCCAGAAAATTCAGATGTTCTCTAAAGAACTTCCGCTTTCACTCGAGCTTGTCTTGCAGGCCATTGAAGCTTACAGGCAACAACTTTCTACGACCACGGAGTACAATTTTCATGGACAATCGGATTGTTCGGAGCAGACTTCAATGGAAGAAGGCCCTGTTCTTGAAGAGTTCATTCCCATTAAGAAAAGGGCTTCCCCTGGTTGTGAAGACGAAGAAAACGAAGAAGATGAACAACATTCGCATAAGCCTAAGATTCTAAAGGAGAACAACAACAATAATAAGAACTCCGATAAGAAAAAATCCGACTGGCTCAGATCCGTTCAGCTCTGGAACGCAGATCCCCCAACTAAAGAGGATTTGCCGAGAAAAGCTACGGTGGTGGAAGTGAAGAGAAATGGAGGTGCGTTCCACCCATTTCAGAGAGAAGACAATAATAATTTTGGGAAGACGAACAATAGCAAAACATCGGCCGGAAAATCTGCATCTCCGGCTCCGGTGCCTGCAATGAGCTCCTCCTCCGGTGCCGTCACCGGCGGTGGCGGAAACAAGAGATCGGAGGAGAAAGAAGGGCAGGGTCCGAGGAAACAACGGCGGTGCTGGTCCCCTGAATTACATAAACGCTTCTTACAAGCCCTTCAACAACTAGGCGGTCCAGATTCTGCAACTCCGAAACAGATCAGAGAGCTCATGAAGGTCGATGGCCTCACAAACGATGAAGTCAAAAGCCACTTGCAGAAATTTCGGTTGCACACAAGAAGACCAAGTCCTATGATTCACAACAACGCTACTTCACAAACAGCTCCATTTGTTCTTGTTGGCAACATTTTTGTGCAACCGCCGGAATATGCGGCAGCGGTGGCGACTTCAACAGCATCAGGTGAGGTAACTACGGTCACTACACCGTCCGGAATTTACGCGCCGGTGGCCACGCACCCCCCTGCCGCGGCTCCTCCTGTGCCGGTGGTCGGGGCACGGCAGGTGGGGAAGCAATTGGAGCACTCACATTCGGATGAAGAAAGGGTGAACCACAGTAGCGAAGGAGCTGTTCATTCAAATTCTTCTCCTGATTCATCATCTTCCACACACACCACTTCTCATTCTCATGGATATTGA 1170 0.4897 MQRQKMGVREYIEALEEERQKIQMFSKELPLSLELVLQAIEAYRQQLSTTTEYNFHGQSDCSEQTSMEEGPVLEEFIPIKKRASPGCEDEENEEDEQHSHKPKILKENNNNNKNSDKKKSDWLRSVQLWNADPPTKEDLPRKATVVEVKRNGGAFHPFQREDNNNFGKTNNSKTSAGKSASPAPVPAMSSSSGAVTGGGGNKRSEEKEGQGPRKQRRCWSPELHKRFLQALQQLGGPDSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRPSPMIHNNATSQTAPFVLVGNIFVQPPEYAAAVATSTASGEVTTVTTPSGIYAPVATHPPAAAPPVPVVGARQVGKQLEHSHSDEERVNHSSEGAVHSNSSPDSSSSTHTTSHSHGY 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1451 389 MobiDBLite consensus disorder prediction 201 220 - -
Lele52g1451 389 MobiDBLite consensus disorder prediction 83 121 - -
Lele52g1451 389 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 214 269 IPR006447 GO:0003677
Lele52g1451 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 357 IPR044787 GO:0003700|GO:0006355
Lele52g1451 389 MobiDBLite consensus disorder prediction 349 364 - -
Lele52g1451 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 271 IPR017930 -
Lele52g1451 389 Coils Coil 8 28 - -
Lele52g1451 389 MobiDBLite consensus disorder prediction 153 220 - -
Lele52g1451 389 FunFam Myb family transcription factor 213 271 - -
Lele52g1451 389 MobiDBLite consensus disorder prediction 344 389 - -
Lele52g1451 389 MobiDBLite consensus disorder prediction 365 389 - -
Lele52g1451 389 Pfam Myb-like DNA-binding domain 216 265 IPR001005 -
Lele52g1451 389 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Lele52g1451 389 Gene3D - 213 271 - -
Lele52g1451 389 MobiDBLite consensus disorder prediction 162 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1451 Lele-ChrLele52 18502405 18504300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1451 2 302 G2-like Transcription Factor Family AT1G13300 47.508 6.55e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele52g1451 Myb_DNA-binding 2e-06 CL0123