Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1450 ATGCAGACTCATCAGTACTCTAATTTCTCCTCCTTATCGTCATATCTTGAACCAGAACAAGTACTTGACGACGAACACTCCATTTCCCTCTCTCTTGGACCTCCTGGCCAACACAACCACCACCTTCCTCATCATAATTCTTCCAAATCTTCTTCATCCAAAGACGTCGTTTCTCTCCATCATCATCATCTTCATCACCACCAAAACCCTAGCTCCACTGATCTTGGCGTCACCGTGGCCCTTCATATCGGCCTTCCTACCGCTACTACTAATGATGGTGGTGGTAGTTCTGGCAAACCCGACCCGTTAATGAGTTCTTCTTCTTCTACGTCTTCGGGTCATGTTCCGGGTCAGTATTGGATTCCTTCTCCTGCTCAGATCCTTATCGGGCCCACTCAATTCTCTTGCTCTGTCTGCAACAAAACATTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGGCCAGAATCTCTGAGAGGGGCAAAACCAGCGTCTTCGATTCTGAGACTTCCATGTTATTGTTGGGCCGAAGGTTGTCGGAACAATATTCAACATCCGAGGTCGAGGCCATTGAAGGATTTTAGAACTCTTCAGACACACTACAAGAGGAAGCACGGAGCGAAGCCGTTCGGCTGCCGGAAATGCGGGAAGCCGTTCGCCGTGAGAGGAGATTGGAGGACTCACGAGAAGAACTGCGGCAAGCTCTGGTTCTGTATCTGTGGCTCCGATTTCAAGCACAAGAGATCCCTCAAAGACCACGTACGGGCCTTCGGCGACGGCCACGCCCCTCACACCGTCGACAGCAGCCGCGACCACCACCACCACCAAGAAGAAGAAGTTGACGAGGAAGAAGACGAAGATGACGAGGAAGAAGAGGACGATAATAATAGTGACGTGTTCGTCTACAGCGGAAATCATGCGTCCATTTACTTCTGA 963 0.4984 MQTHQYSNFSSLSSYLEPEQVLDDEHSISLSLGPPGQHNHHLPHHNSSKSSSSKDVVSLHHHHLHHHQNPSSTDLGVTVALHIGLPTATTNDGGGSSGKPDPLMSSSSSTSSGHVPGQYWIPSPAQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSILRLPCYCWAEGCRNNIQHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVDSSRDHHHHQEEEVDEEEDEDDEEEEDDNNSDVFVYSGNHASIYF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1450 320 MobiDBLite consensus disorder prediction 86 116 - -
Lele52g1450 320 Gene3D Classic Zinc Finger 133 156 - -
Lele52g1450 320 FunFam Zinc finger protein WIP2 188 270 - -
Lele52g1450 320 PANTHER ZINC FINGER PROTEIN WIP2 30 294 IPR043584 GO:0003700|GO:0010468
Lele52g1450 320 SUPERFAMILY beta-beta-alpha zinc fingers 127 156 IPR036236 -
Lele52g1450 320 MobiDBLite consensus disorder prediction 89 116 - -
Lele52g1450 320 Coils Coil 282 302 - -
Lele52g1450 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 161 IPR013087 -
Lele52g1450 320 MobiDBLite consensus disorder prediction 267 320 - -
Lele52g1450 320 MobiDBLite consensus disorder prediction 267 288 - -
Lele52g1450 320 MobiDBLite consensus disorder prediction 289 306 - -
Lele52g1450 320 Gene3D Classic Zinc Finger 178 266 - -
Lele52g1450 320 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Lele52g1450 320 Coils Coil 318 320 - -
Lele52g1450 320 SUPERFAMILY beta-beta-alpha zinc fingers 202 239 IPR036236 -
Lele52g1450 320 MobiDBLite consensus disorder prediction 27 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1450 Lele-ChrLele52 18485160 18486636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1450 24 275 C2H2 Transcription Factor Family AT1G13290 69.960 5.31e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele52g1450 None None None