LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele52g1447	ATGGACGGAGCAAGCTCTATGGATGAAAGCATTACTACTGATTCTATTTCTGTTTCTCGTTCGCTGGTGACGATTCTGTCTAACAAGTCATCGCCGCCGCCGCCCAACAGTCTATGCCGCGTCGGCAGCGGTGCTAGCACCATCGTGGACTCTGATATCGTCGGAGTCGAAGCCGAGTCCCGGAAACTGCCGTCGTCGAAATACAAAGGGGTTGTACCTCAGCCCAATGGCCGTTGGGGTGCTCAGATTTACGAGAAGCACCAGCGAGTCTGGTTGGGAACTTTCAATGAAGAAGATGAGGCGGCGAGAGCGTATGATATCGCCGCACAGCGATTCCGTGGGAGAGACGCCGTCACCAATTTTAAACAACTTGCCGCCGGCCCCGGCGATAACCACAACGACGACTTTGAAGCGGCGTTCCTTAACGAGCATTCGAAAGCGGAGATCGTCGACATGCTCAGGAAGCACACTTACAATGACGAGCTGGGACAGTTCAAGAGAAACTACGGATTGACGGTGGACGCGAACGGGAAACGGATCATCAAGGAAGGATCCAAGGCATCGGGTCGGGTCAACAACGCGCGTGATCGGCTTTTCGAGAAAGCAGTGACACCCAGCGACGTTGGAAAGCTGAATCGGTTGGTGATCCCGAAGCAGCACGCGGAGAAGCACTTCCCCTTGCCGTTGCCGGTAGGAATCTCCGCCCCGTACGCGGCGGCCGCGACGAAGGGCGTGCTATTGAATTTCGAAGACGGTGGCGGAAAGGTGTGGAGGTTCAGGTACTCGTACTGGAACAGTAGCCAGAGCTATGTTCTGACCAAGGGATGGAGCCGGTTCGTGAGGGAGAAGAACCTCAAAGCCGGAGACACGGTTTTCTTCTCCCGCTCGACCGGACCGGACAAGCAACTATACATCGACTGGAAGAAAGCCAGAATTATTTGTACCACCGCCAGCAGCACAACTTCAGGGCCGGAATTGTTGGGACCGGCCGGTCCAGTGGTGGTGGAGCCGGTTCAGATGGTTAGACTATTTGGGGTCAACATGTTGAAGATGCCCGGTTCAGATGCCATTGCTCCAACAAGTGGGTGTTGGAATGGGAAGAGATTAAGAGAGATGGATCTGTTCTCATTGGAATGTACCAAAAAGCCAAAGATCATTGGAGCTTTGTAA	1170	0.5402	MDGASSMDESITTDSISVSRSLVTILSNKSSPPPPNSLCRVGSGASTIVDSDIVGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKQLAAGPGDNHNDDFEAAFLNEHSKAEIVDMLRKHTYNDELGQFKRNYGLTVDANGKRIIKEGSKASGRVNNARDRLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPLPVGISAPYAAAATKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVREKNLKAGDTVFFSRSTGPDKQLYIDWKKARIICTTASSTTSGPELLGPAGPVVVEPVQMVRLFGVNMLKMPGSDAIAPTSGCWNGKRLREMDLFSLECTKKPKIIGAL	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele52g1447	389	Gene3D	AP2/ERF domain	66	123	IPR036955	GO:0003700\|GO:0006355
	Lele52g1447	389	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	62	355	IPR044800	GO:0003700
	Lele52g1447	389	CDD	B3_DNA	197	296	IPR003340	GO:0003677
	Lele52g1447	389	Pfam	B3 DNA binding domain	199	308	IPR003340	GO:0003677
	Lele52g1447	389	Gene3D	-	187	322	IPR015300	-
	Lele52g1447	389	SMART	B3_2	199	311	IPR003340	GO:0003677
	Lele52g1447	389	Pfam	AP2 domain	66	114	IPR001471	GO:0003700\|GO:0006355
	Lele52g1447	389	ProSiteProfiles	B3 DNA-binding domain profile.	199	311	IPR003340	GO:0003677
	Lele52g1447	389	ProSiteProfiles	AP2/ERF domain profile.	67	122	IPR001471	GO:0003700\|GO:0006355
	Lele52g1447	389	SUPERFAMILY	DNA-binding pseudobarrel domain	197	306	IPR015300	-
	Lele52g1447	389	SMART	rav1_2	67	128	IPR001471	GO:0003700\|GO:0006355
	Lele52g1447	389	FunFam	AP2 domain-containing protein RAP2.8	66	123	-	-
	Lele52g1447	389	SUPERFAMILY	DNA-binding domain	66	122	IPR016177	GO:0003677
	Lele52g1447	389	CDD	AP2	66	121	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele52g1447	Lele-ChrLele52	18454434	18455603	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele52g1447	1	389	B3 DNA Binding Superfamily	AT1G25560	56.962	3.34e-141	404

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-RAV	Lele52g1447		B3	8.3e-28	CL0405