Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1442 ATGTTGGTTCAGAGGAGAATGATGAGTTGGAGGAGGGTGGCTAAGTCTCTGCAAGCCTTTGCAGCTTATGGTCTACTCTTCTCCTTCACGCTGCTGCTCGTTCTGAAGCTTGACCATGTCGTTAATTACTCATGGTGGACCATATTTTCGCTTCTATGGCTTTTTCATTCTGTTGTAGCACGAGGAAGGTTTTCCTTGCCTGCTCCTTCAATGCCTCATGATCGCCATTGGGCTCCATGTCATGCCGTTGTAGCAACACCCTTACTTGTTGCTTTTGAGCTACTTCTTTGTATACACCTTGAGATCAGTTATGTGGTAAGTTTAAAGATTGTCTTCTTACCCCTATTGGCTTTTGAAGTGGCAATTTTGATCGATAACATCAGGATGTGTAGGGCTTTAATGCCTGGAGATGATGAAAATATGAGTGATGAAGCAATATGGGAAACCCTTCCTCACTTCTGGGTTGCGATATCCATGGTCTTCTTTATTGCTGCTTCGGTATTCACACTTCTTAAGTTATGTGGTGATGTTGCTGCTCTAGACTGGTGGGACTTATTTATTATCTATGGCATTGCAGAGTGCTTTACCTTTCTTGTTTGTACAAAGTGGTACAATCCAACAATTCATGGAAAATGTCACATTGACAAAGCAGATCCCAGCTCATCATCACTTTCATCATCATTTACTGTAAGATACCTGGACTGGGATAGAGGTTTGGTGGTTTCTGCTGATGAAGAGAGGCAGCAAAGTCGCTTATGCAGTCTGCAGGACATTGGTGGGCATATCATGAAAATTCCATTCATAGCTTTTCAAATTATGCTATTTATGCATTTAGAGGGAACACCACCTGGTGCCAGAACTATGTCGTGTGCTGTTGTCTTTTCTCCCCTTTTTCTGTTGCAAGGAGCTGGGGTTTTATTTGCGGCTTATAGATTAGGGGAGAAAATAGTTCTCGTAGTTTACAGTGGAGATGTTCCTGAAAGATACTCAGATATAGCACTAAAAGCCCGTGATTGTTTTGGATTCTTGCATCGTGGCTCAAGGCTGCTGGGTTGGTGGTCAATAGATGAAGGAAGTCGAGAGGAACAAGCCAGACTTTATTGTGATAGGGATTCTTCAGGGTATAAAACTTTCTCCCCTGATGTGGTGAAGAAAATGCCTAAAGCAGATCTTGTTGAGGAGATCTGGAAACTACAAGCTGCACTAGGTGAGCAGTCAGAGATTACAAAATTTAGCCAGCAGGAGTATGAAAGGCTCCAAAACGAAAGGATCCTATGTAGAGTTTGCTTTGAAGAGCAGATTAATGTGGTCCTGCTTCCATGCAGGCATCGTGTTCTTTGCAGCACATGTGGTGAAAAATGCAAGAGGTGCCCTATCTGCCGTGTTACCATTGAAGATCGAATACCTGTATATGATGTATAG 1422 0.4283 MLVQRRMMSWRRVAKSLQAFAAYGLLFSFTLLLVLKLDHVVNYSWWTIFSLLWLFHSVVARGRFSLPAPSMPHDRHWAPCHAVVATPLLVAFELLLCIHLEISYVVSLKIVFLPLLAFEVAILIDNIRMCRALMPGDDENMSDEAIWETLPHFWVAISMVFFIAASVFTLLKLCGDVAALDWWDLFIIYGIAECFTFLVCTKWYNPTIHGKCHIDKADPSSSSLSSSFTVRYLDWDRGLVVSADEERQQSRLCSLQDIGGHIMKIPFIAFQIMLFMHLEGTPPGARTMSCAVVFSPLFLLQGAGVLFAAYRLGEKIVLVVYSGDVPERYSDIALKARDCFGFLHRGSRLLGWWSIDEGSREEQARLYCDRDSSGYKTFSPDVVKKMPKADLVEEIWKLQAALGEQSEITKFSQQEYERLQNERILCRVCFEEQINVVLLPCRHRVLCSTCGEKCKRCPICRVTIEDRIPVYDV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1442 473 SUPERFAMILY RING/U-box 417 467 - -
Lele52g1442 473 ProSiteProfiles Zinc finger RING-type profile. 426 461 IPR001841 -
Lele52g1442 473 FunFam Kinesin-like protein KIN-7D, mitochondrial 403 471 - -
Lele52g1442 473 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 473 - -
Lele52g1442 473 Pfam Zinc finger, C3HC4 type (RING finger) 425 466 - -
Lele52g1442 473 SMART ring_2 426 460 IPR001841 -
Lele52g1442 473 Pfam Transmembrane Fragile-X-F protein 35 300 IPR019396 -
Lele52g1442 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 472 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1442 Lele-ChrLele52 18373954 18385000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1442 8 473 C3H Transcription Factor Family AT1G73950 64.557 0.0 608