Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1420 ATGTCGGTGGCGTCACCGTCTCCGGCGGCAGCCACCGCCCCACCTCCCCCAACACCAATTCCCTCCACCAATAGTAGTGCGCCGCCGCCCGCCACCACTCCGCCACCACAATCCTCTTCACTCACACCACCATGCAATTCCACTTCGCCGTCGCCTTCGCCACCTCCTCCATCCCCAACCCCTTCCACGCAGTCTCCACCTCCGGTGACTCCGTCAGCACCTCCTCCTGCTGTGCCATCGCCTCCACCAGTACAGTCACGACCACGGCCACCTCAGGCATCAACACCGCCTCCGTCTGTCACTCCACCTCCATTATCTCCTCCTCCTTCACAATCTGTTGCACCTGCGTCACAACCACCACCTCCGCCTAATGCTACTCCGCCTACTTCTCCTGTACTTTCCCCCCCACCACCACGACAATCACCGGCTCCACCGGTGAGTTCTCCTCCGCCTGCAAATTCATCCCCACCACCATCTAACCCATCTCCGGTGCCTTCGCCGCCTGTACCATCGGCAAATCCGCCAAGAAACTCCTCTCCACCTCCTACACCATCGTCAAACCCTCCGGAAAACTCACTTCCACCACCGACATCAAGCCCCCCGGGAAATTCATCTTCACCGTCATCATCTGTGTCACCACCGAATACTTCACCACCTCCGCCTGTGGCTGTGCCACCCCGAGGGTCATCTCCACCACCAGCATCAGCACCGCCTGTAAATTTACCTGCCCCTGCGGCACCTCGGACAAGTCCACCTAGTTCTCAACCAAGTCCACCTCCTTCAAATTCCACCCCAAACTCATCTCCGCCGCCCCCCATAATTCGAATGGCTCCACCTCCGTCCTCACTTTTGTCACCTCCAGCTTCTCAAAATTCCTCCCCACCATCAGAAAGTGGAACGGAAAGTTCAAACCCTAGGACAACGAGTGGCATCGATACTGGTGTTGTAGTGGCTATTGGTGTAGCAGGGGGAATTCTAGTGCTTACCTTGATTGGAATTCTTGCCTGGTGCATGATAAGGAGGCAAAAGAAACGGGGGCCTGAGAGTGGTAGTTATGTCATGCCATCCACTTCTGGTTCACTACCCGAGTCAGATTCATCCTTTTTTAAGACACATTCTTCAGCTCCTCTTGTACAAAGCGGTTCTGGTAGTGACACTGTGTACACACCATCTGAGCCGGGTGGACTAGGCAACTCAAGGACATGGTTTACATACGAAGAACTAGTCAAAGCTACAAATGGTTTTGCGCCTCAAAATCTTTTGGGTGAGGGTGGATTTGGTTCTGTATATAAAGGATACCTACCAGATGGGAGAGAGATAGCAGTCAAACAGCTGAAAATTGATGGGGGTCAGGGCGAAAGAGAATTCAAAGCTGAAGTGGAGATTATTAGTCGCATTCATCATCGGCATTTGGTCTCTTTGGTGGGATACTGCATTTTAGATAGCAGAAGGCTGCTCGTCTATGATTATGTCCCCAACAAAACCCTCTATCATCATCTTCATGGGGAAGGTGTGCCAGTGTTGAGCTGGGAAAAACGTGTGAAGATTGCTGCTGGTGCAGCTCGAGGAATTGCTTATCTCCATGAAGATTGCAATCCTCGGATCATTCACAGGGATATCAAGTCCTCAAACATTCTTTTAGATTACAACTTTGATGCTCAAGTCTCAGATTTTGGGCTAGCCAAATTAACCCTTGATACAGTTTCACACATAAGCACTCGTGTCATGGGAACATTTGGATATGTTGCACCAGAATATGCATCAAGTGGCAGATTGACTGAGAAATCTGATGTATTTTCTTTTGGGGTTGTACTTCTGGAGCTCATTACTGGACGGAAGCCTGTAGATGCATCTCAACCCTTGGGGGATGAGAGCCTAGTTGAATGGGCTCGACCTCTGCTGAGTCATGCAATTGATAATGAGGAATTTGAAGGTTTAACAGACCCTAGGCTTGAAAAGAACTACGTTGAAAGTGAGATGTTTCGCATGGTTGAAATTTCTGCAACTTGTGTGCGACATTCGGCTACCAAGAGACCTCGAATGGGACAGGTTGTGAGAGCTTTTGAGACCATAATAAATTCAGATTTAAACAACGGGATGAGACCAGGGGAAAGTGAGGCATTTAACTCTGCACAGCAATCTGCAGAAATAAGAATGTTTCGAAGGATGGCATTTGGTAGCCAAGATTACAGCACAGACTTTTTTAGTCAGACAAGTTTGAACTCAACATAG 2232 0.5 MSVASPSPAAATAPPPPTPIPSTNSSAPPPATTPPPQSSSLTPPCNSTSPSPSPPPPSPTPSTQSPPPVTPSAPPPAVPSPPPVQSRPRPPQASTPPPSVTPPPLSPPPSQSVAPASQPPPPPNATPPTSPVLSPPPPRQSPAPPVSSPPPANSSPPPSNPSPVPSPPVPSANPPRNSSPPPTPSSNPPENSLPPPTSSPPGNSSSPSSSVSPPNTSPPPPVAVPPRGSSPPPASAPPVNLPAPAAPRTSPPSSQPSPPPSNSTPNSSPPPPIIRMAPPPSSLLSPPASQNSSPPSESGTESSNPRTTSGIDTGVVVAIGVAGGILVLTLIGILAWCMIRRQKKRGPESGSYVMPSTSGSLPESDSSFFKTHSSAPLVQSGSGSDTVYTPSEPGGLGNSRTWFTYEELVKATNGFAPQNLLGEGGFGSVYKGYLPDGREIAVKQLKIDGGQGEREFKAEVEIISRIHHRHLVSLVGYCILDSRRLLVYDYVPNKTLYHHLHGEGVPVLSWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNFDAQVSDFGLAKLTLDTVSHISTRVMGTFGYVAPEYASSGRLTEKSDVFSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLSHAIDNEEFEGLTDPRLEKNYVESEMFRMVEISATCVRHSATKRPRMGQVVRAFETIINSDLNNGMRPGESEAFNSAQQSAEIRMFRRMAFGSQDYSTDFFSQTSLNST 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1420 743 SUPERFAMILY Protein kinase-like (PK-like) 394 688 IPR011009 -
Lele52g1420 743 FunFam proline-rich receptor-like protein kinase PERK8 491 702 - -
Lele52g1420 743 SMART serkin_6 415 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1420 743 ProSiteProfiles Protein kinase domain profile. 415 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1420 743 MobiDBLite consensus disorder prediction 346 393 - -
Lele52g1420 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Lele52g1420 743 FunFam Proline-rich receptor-like protein kinase PERK8 387 490 - -
Lele52g1420 743 Pfam Protein kinase domain 418 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1420 743 ProSitePatterns Protein kinases ATP-binding region signature. 421 443 IPR017441 GO:0005524
Lele52g1420 743 CDD STKc_IRAK 421 691 - -
Lele52g1420 743 MobiDBLite consensus disorder prediction 286 308 - -
Lele52g1420 743 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 323 723 - -
Lele52g1420 743 CDD TM_EGFR-like 303 345 - -
Lele52g1420 743 MobiDBLite consensus disorder prediction 212 285 - -
Lele52g1420 743 Gene3D Transferase(Phosphotransferase) domain 1 491 710 - -
Lele52g1420 743 MobiDBLite consensus disorder prediction 351 393 - -
Lele52g1420 743 MobiDBLite consensus disorder prediction 1 308 - -
Lele52g1420 743 Gene3D Phosphorylase Kinase; domain 1 392 490 - -
Lele52g1420 743 MobiDBLite consensus disorder prediction 9 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1420 Lele-ChrLele52 18104089 18108837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1420 287 739 Trihelix Transcription Factor Family AT1G70460 53.484 8.99e-175 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lele52g1420 Pkinase 7.6e-43 CL0016