Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1417 ATGACTAGTCTTGCAGTAATCACCAGATTTTCCATTCAACTATTCAGCATGCTCTTCAACTTCCTCAAGCTAGCTTATCAAGCTTTCAAATGGTTCTTAGACTTCCTTCTCTACCACCCATTTTACAGCCTTCATGTTCATCATCATCATCAACAACCTCTTCATCATGAGTTTCAGATGGTTACAGAAGATCGAGTAGAAATATGGCGTCCTCGTCTTCATGAAGGAGGAGGAGAAGAAGAAGAAGTGGATTGTGTTGTGTGTCTGAGCAAGATTGGTGAAGGAGAAGAAGTTAGAGTGCTGAGGTGTGAACATGTTTTTCATAGAGATTGTTTGAATCAATGGGTTGAATTTAGGAACTATACTTGTCCTCTTTGTGGGGACTTTCTGGGTTGTGGGATTAGGAGTGTTGTTCATGGTTGGGGAGGAACAACCGATGAGATTCTCTTTAGGTTTTCTTCTTCTTCTTGGTAA 474 0.4072 MTSLAVITRFSIQLFSMLFNFLKLAYQAFKWFLDFLLYHPFYSLHVHHHHQQPLHHEFQMVTEDRVEIWRPRLHEGGGEEEEVDCVVCLSKIGEGEEVRVLRCEHVFHRDCLNQWVEFRNYTCPLCGDFLGCGIRSVVHGWGGTTDEILFRFSSSSW 157
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1417 157 Pfam Ring finger domain 84 126 IPR001841 -
Lele52g1417 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 129 IPR013083 -
Lele52g1417 157 SUPERFAMILY RING/U-box 79 130 - -
Lele52g1417 157 SMART ring_2 85 126 IPR001841 -
Lele52g1417 157 PANTHER - 17 126 - -
Lele52g1417 157 ProSiteProfiles Zinc finger RING-type profile. 85 126 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele52g1417 Lele-ChrLele52 18077466 18077939 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1417 84 130 C3H Transcription Factor Family AT1G15100 63.830 3.28e-15 67.0