Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1415 ATGGCCACCACTACAACCACCACTCTTGCAATAATCTCCAGATTTTCTATTCATCTGTTCAGCATGCTCTTCAACTTCCTCAAGCTAACTTCTTCCCATTTCAAATGGGTTTTAGAGTTCCTTCTATACCACCCATTTTACAACCTTCGTGCTCATCATCATCATCAACCTCTTGAAGAGTTTCAGATGATTACAGAAGATCGAGTCGAAATATGGCATCGTCATCGTGAAGGAGGAGGAGAAGAAGAAGAAGTGGATTGTGCAGTGTGTCTGAACAAGATTGGTGAAGGAGAAGAAGTTAAGGTGTTGAGGTGTGAACATGTTTTTCATAGAGATTGTTTGAATCAATGGGTTGGATTTAGGAACTTTACTTGTCCTCTTTGTAGGGACTTTCTGTGTTCTGGGATTAGGTCTGTTAATGGTGAGGGAGGAGAAGAACATGTGCTTTTCTTTAAGTTTTCTGATAATAATTATGAGAGTGAGAACTGGTGGCTACGGTGA 501 0.4052 MATTTTTTLAIISRFSIHLFSMLFNFLKLTSSHFKWVLEFLLYHPFYNLRAHHHHQPLEEFQMITEDRVEIWHRHREGGGEEEEVDCAVCLNKIGEGEEVKVLRCEHVFHRDCLNQWVGFRNFTCPLCRDFLCSGIRSVNGEGGEEHVLFFKFSDNNYESENWWLR 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1415 166 PANTHER - 12 131 - -
Lele52g1415 166 Pfam Ring finger domain 86 129 IPR001841 -
Lele52g1415 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 133 IPR013083 -
Lele52g1415 166 SUPERFAMILY RING/U-box 81 133 - -
Lele52g1415 166 SMART ring_2 87 128 IPR001841 -
Lele52g1415 166 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1415 Lele-ChrLele52 18054661 18055161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1415 86 134 C3H Transcription Factor Family AT1G15100 61.224 4.42e-15 67.0