Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1398 ATGCAAAGAAGAGAAGATTTTTCTTTCTCTATTTTAGCTTTCTTCTTCATCATCATCTTCTTCTGCACTTCTTCAGTATCTGGTTTGCTTTCTTCCAAAGGTATCAACAATGAAGTGCAAGCTCTTATAGGAATTAAAAGTTCTTTAAAGGATCCTAACAATGCCCTTCATAACTGGGATATGTATGAAGTTGAGCCTTGTAACTGGGCTTTTGTATCTTGCTCTCCTGACGATAGTTCTGTGAATACCCTGCAATTTCCAAGCCAAAACTTTTCTGGTTCTCTTTCCCCAAGCATTAGCAACTTAACCAATCTCAGGACTCTGACCCTGCAAGGGAATAATATATCAGGAACAATTCCTTCTGAGATTGGGATGCTGCAAAAGCTTCAGACTCTTGATCTTTCTCATAATTCTTTCACTGGTCAACTTCCAGAGAGTCTCTCCCACATGAAAAGTCTCAATTATCTGAGACTGAACAATAATAGTCTTAAAGGACCAATACCTTCCTCTTTGGCTAACATGACCCAGCTTGCTATTATGGATATATCTTATAATAACTTGAGTGGACCTCTACCTACAATAAATGCAAAAACATTCAATATTGTAGGAAATCCCCAGATTTGTGCCCCTGGAACTGACCGACATTGCTTCAGAACAACACAACTTTCAACTAATTTTAATAACTCTCAAGGTTCAGCAGCCACCATTAAACCAAAGAATCACACACTTGTGCTGGCAATTGCTTTAACAGTAAGCTGTGTCTGCATACTAACTCTGGTGTTCGGCTTCCTCTGGTGGAGACAAAGATCAAGCAAACAAGTTTTCTTCGACATCAATGAACAAATGCGAGAAGATGTGCGGCTTGGAAACTTGAGAAAGTTCCACATAAGAGAACTCGAGGTCGCCACGAACAAGTTCAGCAGCAAGAACCTGATTGGCAAAGGAGGATATGGGAATGTGTACAAAGGCTATCTTTCAGACGGTGGGGTCCTAGCAGTGAAAAGGCTTAGAGATGGAAGTGCCATTACTGGGGAGACTCAGTTTCAGACTGAAGTGGAGATGATAAGCCTTGCTGTACATCGCAACTTGCTTCGTCTCTATGGATGCTGCATCACTCCTACAGAGAGACTCCTCGTTTATCCCTTCATGTCCAACGGTAGTGTTGCTTCTCGTCTCAAAGTGAAGCCTGCTTTAGAGTGGAGCACAAGGAAGAGGATAGCTTTGGGAGCCGCAAGAGGGTTGGCATACCTACATGAGCAGTGTGATCCCAAGATTATTCATAGGGATGTGAAGGCCGCAAATATATTGCTCGATGAGTACTGTGAAGCTGTGGTTGGCGATTTTGGGTTAGCTAAACTGTTAGATCACAAGGACTCTCATGTGACTACAGCAGTTCGAGGCACTGTAGGCCATATAGCACCAGAGTACCTCTCAACAGGCCAATCTTCTGATAAAACTGATGTCTTTGGCTTTGGGATTCTTATCCTTGAACTCATCTCTGGCCGCACGGCTCTTGAATTTGGAAAAGCAGCTAACCAGAAAGGAGCCATGCTTGATTGGGTGAAGAAAATGCATCAAGAAAAGAAACTTAACTTGCTCATTGACAAGGAACTTAGAAACAACTATGACATAATTGAGCTTGAAGAAATGGTTAGAATAGCACTCTTATGTACCCAGTACCTTCCAGCTCATAGACCCAGAATGTCTGAAGTGGTTAGAATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCAAAGGGAGCTGAATCAACAAGGAGCAGAGCAAGCGAGCCATCTTCTTCAGAACGCTACTCTGATCTCACTGACGACTCTACACTGTTTAATCAGGCCATTGAGCTTTCTGGTCCAAGGTGA 1881 0.4269 MQRREDFSFSILAFFFIIIFFCTSSVSGLLSSKGINNEVQALIGIKSSLKDPNNALHNWDMYEVEPCNWAFVSCSPDDSSVNTLQFPSQNFSGSLSPSISNLTNLRTLTLQGNNISGTIPSEIGMLQKLQTLDLSHNSFTGQLPESLSHMKSLNYLRLNNNSLKGPIPSSLANMTQLAIMDISYNNLSGPLPTINAKTFNIVGNPQICAPGTDRHCFRTTQLSTNFNNSQGSAATIKPKNHTLVLAIALTVSCVCILTLVFGFLWWRQRSSKQVFFDINEQMREDVRLGNLRKFHIRELEVATNKFSSKNLIGKGGYGNVYKGYLSDGGVLAVKRLRDGSAITGETQFQTEVEMISLAVHRNLLRLYGCCITPTERLLVYPFMSNGSVASRLKVKPALEWSTRKRIALGAARGLAYLHEQCDPKIIHRDVKAANILLDEYCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSDKTDVFGFGILILELISGRTALEFGKAANQKGAMLDWVKKMHQEKKLNLLIDKELRNNYDIIELEEMVRIALLCTQYLPAHRPRMSEVVRMLEGDGLAEKWEASKGAESTRSRASEPSSSERYSDLTDDSTLFNQAIELSGPR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1398 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Lele52g1398 626 SMART serkin_6 306 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1398 626 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Lele52g1398 626 SUPERFAMILY L domain-like 36 201 - -
Lele52g1398 626 Gene3D Ribonuclease Inhibitor 34 218 IPR032675 -
Lele52g1398 626 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Lele52g1398 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 586 - -
Lele52g1398 626 MobiDBLite consensus disorder prediction 584 626 - -
Lele52g1398 626 ProSiteProfiles Leucine-rich repeat profile. 104 126 IPR001611 GO:0005515
Lele52g1398 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Lele52g1398 626 MobiDBLite consensus disorder prediction 593 620 - -
Lele52g1398 626 SUPERFAMILY Protein kinase-like (PK-like) 291 578 IPR011009 -
Lele52g1398 626 Pfam Protein kinase domain 307 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1398 626 ProSiteProfiles Protein kinase domain profile. 306 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1398 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Lele52g1398 626 FunFam Somatic embryogenesis receptor-like kinase 1 383 595 - -
Lele52g1398 626 Pfam Leucine rich repeat 103 163 IPR001611 GO:0005515
Lele52g1398 626 FunFam Somatic embryogenesis receptor kinase 1 34 218 - -
Lele52g1398 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1398 Lele-ChrLele52 17851835 17856991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1398 13 626 Receptor kinase-like Gene Family AT5G16000 67.093 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele52g1398 Pkinase 9.1e-43 CL0016