Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1377 ATGAGGCCAGGGAAAGGGAATCAGGAGGACGATGAGTACGAGGAAGAAGAGTTCGGTTCTAAAAAGGAAGGTCCTTCGTCCACTCCTAATAGCAATAACGCCAACAAAGTTATCTTTTCTTATGTTGGAATGCCTGTTGTTAAAACAGATACAAAAGCTATTGATAAGGCTAGTGCTATAAGATCAAAACATTCAGTTACTGAGCAGCGAAGGCGGAGCAAGATTAATGAGAGATTCCAGATATTAAGAGATCTCATACCTCATAGTGATCAAAAGAGGGATACTGCATCATTCCTATTAGAGGTCATTGAGTATGTCCAGTACTTACAGGAGAAGGTACAAAAGTATGAAGGTTCATATCAGGGTTGGGCTCAGGAGCCCACTAAGTTGATGCCTTGGAGAAACAGTCACTGGCGCGTTCAAAGCTTTGGCCAACCTCAAGCAAAGAATGGTTCTGGACCTGTATCACCTTTTCCTGGGAAGTTTGATGAAAGCAACATTAGTGTCTCCCCAACTGTGCTCAGTGGCTCCCAGAATATGATCGATCCTGAACAGAGCAGGGATATTGTCAGTAAAACAGTGGAGAGGCAAGCTGAACTAGAATGCAAGGGGATACCTCTGCCAATGCCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGCACTTGCCCATCCTCTTCAGGGGCCTGTTTCTGATGGGCAATCAGCTGAATGTCCATCCAATAGTGAACCTCATAACCAACAGGAAGAGCTGACAATTGAAGGAGGAACAATTAACATCTCAAGTACATACTCTCAAGGGCTGTTACACAATCTGACTCAAGCACTACAGAGTGCCGGTTTAGATCTCTCACAGGCTAGCATTTCAGTTCAAATTAATCTTGGGAAGCGGGCAAACAAAGGACTGGGCTGTGGGACATCTGCTCCTATGAATCATGATAATATCCCATCTAGCAATCAAGGAATGTCACATTTTAGAGATGCAGGCAACGGAGAAGACACTGATCAAGCTCAAAAGAGGCTGAAAACGTAG 1041 0.4419 MRPGKGNQEDDEYEEEEFGSKKEGPSSTPNSNNANKVIFSYVGMPVVKTDTKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWAQEPTKLMPWRNSHWRVQSFGQPQAKNGSGPVSPFPGKFDESNISVSPTVLSGSQNMIDPEQSRDIVSKTVERQAELECKGIPLPMPMHANMSVPVRSDGALAHPLQGPVSDGQSAECPSNSEPHNQQEELTIEGGTINISSTYSQGLLHNLTQALQSAGLDLSQASISVQINLGKRANKGLGCGTSAPMNHDNIPSSNQGMSHFRDAGNGEDTDQAQKRLKT 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1377 346 Gene3D - 57 130 IPR036638 GO:0046983
Lele52g1377 346 Pfam Helix-loop-helix DNA-binding domain 61 110 IPR011598 GO:0046983
Lele52g1377 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 109 IPR011598 GO:0046983
Lele52g1377 346 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 7 346 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lele52g1377 346 MobiDBLite consensus disorder prediction 313 328 - -
Lele52g1377 346 FunFam BHLH domain class transcription factor 57 129 - -
Lele52g1377 346 MobiDBLite consensus disorder prediction 309 346 - -
Lele52g1377 346 CDD bHLH_AtBIM_like 58 134 - -
Lele52g1377 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 131 IPR036638 GO:0046983
Lele52g1377 346 SMART finulus 65 115 IPR011598 GO:0046983
Lele52g1377 346 MobiDBLite consensus disorder prediction 1 34 - -
Lele52g1377 346 MobiDBLite consensus disorder prediction 224 249 - -
Lele52g1377 346 MobiDBLite consensus disorder prediction 331 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1377 Lele-ChrLele52 17641228 17646922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1377 1 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 53.846 5.22e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele52g1377 HLH 1.9e-13 No_clan