Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1366 ATGATTGAACAAAGGGGTGAAGAACCTGACAAATATGCTCCTACTGACCTTCTAAGGGCTCTAATAATTGCTCCAACTAGGGAACTTGCACTTAAGGTCACTGATCATCTGAAAGCAGTAGCCAAATATATCAATGTTAGAGTGACACCTATAGTTGGGGGCATTTTAGCAGAAAAACAGGAGAGACTCTTAAAAGCAAGGCCTGAGATTGTTGTTGGGACGCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAGCATCTAGTTGAGTTACATTCCTTGTCATTCTTTGTGCTTGATGAGGCTGATCGAATTATACAAAGTGGTCATTTTAAAGAGTTGCAATCAATAATTGGCATGCTCCCCATGTCCAACATGCCTGGTGGGGATGATCCTGAATCTGCACAAAATTGCATTACAATTTCAAGCTCCCAAAGAAAGAAAAGACAAACTCTAGTTTTTTCGGCAACTGTTGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGCGCTTCAACAAAAGATTTAATTCCATTGAAGCCCCGTCTGAACCCTAAATTGAAGCCCAATGTCCATGGGGTCAATTTCATGATCTAG 600 0.415 MIEQRGEEPDKYAPTDLLRALIIAPTRELALKVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRIIQSGHFKELQSIIGMLPMSNMPGGDDPESAQNCITISSSQRKKRQTLVFSATVALSADFRKKLKRASTKDLIPLKPRLNPKLKPNVHGVNFMI 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1366 199 Pfam DEAD/DEAH box helicase 18 160 IPR011545 GO:0003676|GO:0005524
Lele52g1366 199 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 177 IPR014001 -
Lele52g1366 199 PANTHER RNA HELICASE 18 176 - -
Lele52g1366 199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 160 IPR027417 -
Lele52g1366 199 Gene3D - 1 176 IPR027417 -
Lele52g1366 199 SMART ultradead3 5 198 IPR014001 -
Lele52g1366 199 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 99 107 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1366 Lele-ChrLele52 17348239 17352167 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1366 19 123 Eukaryotic Initiation Factors Gene Family AT3G13920 35.238 1.10e-17 78.6