Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1362 ATGCTTGGTTACGTCCCCTTGCTTGAAGACTTCAAAACGTTTCCCCTCTATTTGTGTTGTATAATATCAAATTTAAGCACTCATATACCTCTATTGTCTTTGGTTGGTCGTGCGGTTGGTTTCTGCAACTCTTTGTATTTTCCCATGGAGGTCAATCCACCAGAAACCTCTGCTCAGAACCAAAAGAGAAGGCCCAAGAGAAAGCGAACCCGGGAAGACCCAGAACTCGAACGGCTGAACTCATTGTCGTGGAACCCCGCTCTTTCTGAAAATGATGATCCTTTTTCTTTGCTTGTAGGCTCAAGTGAACTTGAAGGAGGTTTCCTGTCACTAGAAGAGATTGATGAAGCTGCGTATGGTTTAGAAATCCCCGATCCCAAAGAAGACAAGAGGAAGAAGTCTAAACATATAGCAGATTTAAAGAAACAGAAGCTAAGTGAAGTAGAGGGTGCCTGTAATGATGAGGCTGGGGTGACTTTTGAAGAAAACAAGGATGAGAGTGTGATGACTATAAAGAAGGAAAAGGAGAAGAAAAAGAAGAAGAAGAAGAAGAAGGAAGCTGCTGATCAAGTTATTAATGTGAAAGATGATAAGGATGAAGAGGACATTGATGACATGGAATTTTATGCATGGAATGAGTTGAGACTTCATCCTCTGCTCATGAAAGCAATTTGCAAGCTTGGATTCAAGGAGCCCACGCCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTATTGGGGCTTCGGAGACTGGATCTGGGAAAACTCTTGCTTTTGGTTTACCCATTTTGCAACGCCTTTTAGATGAGAGGGAGAAGGCTACAAAGATGGTTGAACAAAGGGGTGAAGAACCTGACAAATATGCTCCTACTGGCCTTTTAAGGGCTCTAATAATTGCTCCAACTAGGGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAATGTATCAATGTTAGAGTGACTCCTATAGTTGGGGGCATTTTAGCAGAAAAACAGGAGAGACTCTTAAAAGCAAGGCCTGAGATTGTTGTTGGGACGCCAGGGAGGTTGTGGGAACTTATGTCAGCTGGAGAAAAGCATCTAGTTGAGTTACATTCCTTGTCATTCTTTGTGCTTGATGAGGCTGATCGAATGATACAAAGTGGTCATTTTAAAGAGTTGCAATCAATAATTGACATGCTCCCCATGTCCAACATGCCTGGTGGGGATGATCCTGAATCTGCACAAAATTGCATTACAATTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTAGTTTTTTCGGCAACTGTTGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGTGCTTCAACAAAGCAAAATCAATCAGTGTTAGATGGATTTAATTCCATTGAAGCCCTGTCTGAACGTGCAGGAATGAGACCCAATGCTGCAGTGATTGATCTCACTAATCCAACAATATTGGCAGCGAAGCTTGAAGAGTCATTTATTGAATGCAAAGAAGAAGACAAAGATGCTTATCTGTACTATATTTTGACTGTCCATAGGCAAGGCCGCACAATAGTATTCTGTACATCAATTGCAGCTTTGCGCCATATCTCTTCTCTACTTCGCATTCTTGGCACTAACGCTTGGGCTCTTCATGCCCAAATGCAGCAGCGAGCACGTTTAAAGGCCATTGATCGCTTTCGTGAAGATGAAAATGGCATACTTGTTGCTACTGATGTTGCAGCTAGGGGTCTTGATATTCCTGACGTTAGAGCAGTTGTCCACTATCAGCTTCCACATTCTGCAGATGTTTATGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCTGAAGGGTGCAGCATTGCTTTAATCTCACCAAAAGATACAACAAAGTTTGCTTCGTTGTGCAAGTCCTTCTCCAAGGACACTTTTCAGCGATTTCCTTTAGAGAATTCATACATGCCAGAAGTTCTTAAGCGATTGTCTGTTGCCCGTCAAATAGACAAAATAGCACGAAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGCGGAATGCTGAATCAGTGAATTTAGTTGTGGAAAATTATGACAGTGAGGAGGAAAGAGTGAAGAAATATAGGCAAATGAAAGCCAGCTCTACTCAGTTGAAGAATTTGCAGCAGGAGCTCAATACGCTTCTTTCACGTCCCTTACAATCAGAACAATTTTCACATCGATATTTAGCAGGGGTATTACAATGTAGACCTTCGTTTTATGCTGGGATCACACCTCTGATGCAGGAACAATTCCAACAATTAGCCAGGCAAAAGCAAGGAAGTGCAGGAGGAACCGGCAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTAGAAGCACTTCAGGCTTTGCGGAATGCTGGTGAAGAGGTGCGCATGAACGTCAAGGAAGGGACAGGAAAGAGGATGGAGAATTTGAAACGAAAGAGAAAAGAAGAGAAAAAACGTATGCGTGACGAGCGAAGGAAGCAAAAGAGAAAGATGAAAATGGAGAATGAATAG 2547 0.4236 MLGYVPLLEDFKTFPLYLCCIISNLSTHIPLLSLVGRAVGFCNSLYFPMEVNPPETSAQNQKRRPKRKRTREDPELERLNSLSWNPALSENDDPFSLLVGSSELEGGFLSLEEIDEAAYGLEIPDPKEDKRKKSKHIADLKKQKLSEVEGACNDEAGVTFEENKDESVMTIKKEKEKKKKKKKKKEAADQVINVKDDKDEEDIDDMEFYAWNELRLHPLLMKAICKLGFKEPTPIQKACIPAAAHQGKDVIGASETGSGKTLAFGLPILQRLLDEREKATKMVEQRGEEPDKYAPTGLLRALIIAPTRELALQVTDHLKAVAKCINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQSGHFKELQSIIDMLPMSNMPGGDDPESAQNCITISSYQRKKRQTLVFSATVALSADFRKKLKRASTKQNQSVLDGFNSIEALSERAGMRPNAAVIDLTNPTILAAKLEESFIECKEEDKDAYLYYILTVHRQGRTIVFCTSIAALRHISSLLRILGTNAWALHAQMQQRARLKAIDRFREDENGILVATDVAARGLDIPDVRAVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTTKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSVARQIDKIARKDSQEKAQKSWFERNAESVNLVVENYDSEEERVKKYRQMKASSTQLKNLQQELNTLLSRPLQSEQFSHRYLAGVLQCRPSFYAGITPLMQEQFQQLARQKQGSAGGTGKGKLVVIGQDCVEALQALRNAGEEVRMNVKEGTGKRMENLKRKRKEEKKRMRDERRKQKRKMKMENE 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1362 848 SMART helicmild6 535 616 IPR001650 -
Lele52g1362 848 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 209 237 IPR014014 GO:0003724
Lele52g1362 848 MobiDBLite consensus disorder prediction 53 75 - -
Lele52g1362 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 404 IPR027417 -
Lele52g1362 848 MobiDBLite consensus disorder prediction 823 838 - -
Lele52g1362 848 Gene3D - 167 459 IPR027417 -
Lele52g1362 848 Coils Coil 168 191 - -
Lele52g1362 848 Coils Coil 811 848 - -
Lele52g1362 848 CDD DEADc_DDX24 220 485 - -
Lele52g1362 848 Gene3D - 492 738 IPR027417 -
Lele52g1362 848 Coils Coil 712 732 - -
Lele52g1362 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 630 IPR027417 -
Lele52g1362 848 CDD SF2_C_DEAD 496 625 - -
Lele52g1362 848 Pfam DEAD/DEAH box helicase 233 441 IPR011545 GO:0003676|GO:0005524
Lele52g1362 848 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 656 IPR001650 -
Lele52g1362 848 Coils Coil 269 289 - -
Lele52g1362 848 Pfam Helicase conserved C-terminal domain 507 615 IPR001650 -
Lele52g1362 848 SMART ultradead3 228 468 IPR014001 -
Lele52g1362 848 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 380 388 IPR000629 -
Lele52g1362 848 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 241 458 IPR014001 -
Lele52g1362 848 PANTHER RNA HELICASE 176 803 - -
Lele52g1362 848 MobiDBLite consensus disorder prediction 810 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1362 Lele-ChrLele52 17329438 17339027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1362 210 656 Eukaryotic Initiation Factors Gene Family AT5G11200 29.011 4.59e-40 152