Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1361 ATGGGTAGAGGAAGAGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGGCAAGTAACATTTGCCAAGAGGAGAAATGGGCTTCTGAAGAAGGCTTATGAACTCTCCGTACTCTGCGATGCTGAGGTTGCTCTTATCATCTTCTCCAACCGAGGCAAGCTCTACGAGTTCTGCAGCAACTCAAGCATGGCCAACACAATTGAACGGTACCAAAGATGCAGCTATGGAGCCTTGGAAGCAGACCAACCTGCAATGGAGACACAGAGGTGCTACCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCACTACAGCGCGCACAGAGAAATCTGCTTGGGGAAGAACTGGAGCAGTTGGGCGTAAAGGAGCTTGAGCAGCTTGAGCGTCAGCTGGACTCTTCACTAAAACAAATCAGGTCGAACAAGACACAGCATTTGCTTGATCAACTCACTGATTTGCAAAGGAAGGAAGAGATGCTTCTGGAAACTAACAGTGTCTTGAGGTGCAAGTTGGACGAAATAAATATAGGCCTTCAACCACCATGGGAAGCAAGGGAGGGAAATGATTCATACAGCCGCCAGCCTCCACACTCGGAGGGAATCTTTGGGATTACACAATGCAGTCATACATTGCACATGGGCTTTGGTTCTGCAGAAACAAATGAAGCAGCAGCTGGAACCTCAGCCCAAAATGCTAGTGAATTTCTGCCAGGATGGATGGCATGA 726 0.4766 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSNSSMANTIERYQRCSYGALEADQPAMETQRCYQEYLKLKSKVEALQRAQRNLLGEELEQLGVKELEQLERQLDSSLKQIRSNKTQHLLDQLTDLQRKEEMLLETNSVLRCKLDEINIGLQPPWEAREGNDSYSRQPPHSEGIFGITQCSHTLHMGFGSAETNEAAAGTSAQNASEFLPGWMA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1361 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Lele52g1361 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele52g1361 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele52g1361 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele52g1361 241 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele52g1361 241 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lele52g1361 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele52g1361 241 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Lele52g1361 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele52g1361 241 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele52g1361 241 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lele52g1361 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele52g1361 241 Coils Coil 121 144 - -
Lele52g1361 241 MobiDBLite consensus disorder prediction 222 241 - -
Lele52g1361 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele52g1361 241 FunFam MADS-box transcription factor 1 13 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1361 Lele-ChrLele52 17302380 17316416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1361 1 240 MADS-box Gene Family AT5G15800 59.542 1.69e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele52g1361 K-box 4e-26 No_clan