Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1356 ATGGAATCTTGGGGTTATCTCTCAGAAGAGAAAGGCTATTTGATTTCTGATGAGATGGATTTTTCGCTCGAAGCTTTTATGAGAGGCAAAAAGGGCAAAGATTCCTGTAACTTGGAGAGAGATGAATTTGGTTCCAGTTGTGGGGAAGCTAAAAGCGTGGAAGTTTTTGACCTGGGATTTCATGACTTGTTTCAAAATGAGCTAGATAGAAATCATAGTAAAAGAGTGGCTTCCTCTAACAATGTTATTGCCATGGATTCATCTTTTGCAGAACAAGAATCTCAGCCAACGTTTTTAGGTTCTCTAGTTGAATCTAAAAGTCCCAATTCATCACTGATTGATTTGAAGCTTGGGAGAATATCAGATTGTAATAAAGATGCAAGTGGTGATAGAATTGCAAGGAGAGCTCGGTGTTCCGGCTCACCAACTCAGACGCCTTTTTGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGAGTACCACAAAAGGCATAGAGTTTGTGATGCACACTCCAAGACAGCCAAAGTTATTGTTAATGGCATTGAGCAGAGGTTTTGTCAGCAGTGTAGCAGGTTCCATTTGCTAGCCGAGTTTGATGAGGGCAAGCGCAGTTGTCGCAGACGTCTAGCTGGACACAATCAACGCAGAAGGAAGCCTCAGTTTGATTACTTATCTGGTAAACCCTACAAGATGCTTCAGTTACATCAAGGGACCAAAAATCTGGAGGCTTCATTTCAGAAGAGACCCCAATTTGCCTCACAAGACTTGATCAGTTGTGGCATTTTGTATGAACAAACCAATCTCAGCGTCACACGTAGTCTGGAGGAGTTGTTGACGCCCTCAAACAAGAGCTGTGCTCTCTCTCTCCTGTCAGTTCACTTGCAGAACCCGCCATGCCACTCAGCAGGAAACCTGGGACCTAGTTCCCATGCTTATGGCGCGGATGAAAAAGTTTCCAAAATACATTTGGGCAAAAACCCTGTGGACAAGCATGAGCAAAATGAGTCACCATCATCACAACATGGATTGAGCTCCATGGGAGCTATAAAGAACGGATCCACATTGCTCTCTAATGTTGATTGTGCTGATCATCTTCAGGTTTGCCAAACATCAGAATTATTGGATGCCAAACACTATGTTTCAGCTGAGGATGGAGACATTGTTGATCTTTTGCAATTGTCTTCACATCTTCAAAGGGTGGAGCATCAGAGGAATTCATTTCTTCAGTGA 1239 0.4278 MESWGYLSEEKGYLISDEMDFSLEAFMRGKKGKDSCNLERDEFGSSCGEAKSVEVFDLGFHDLFQNELDRNHSKRVASSNNVIAMDSSFAEQESQPTFLGSLVESKSPNSSLIDLKLGRISDCNKDASGDRIARRARCSGSPTQTPFCQVYGCNMDLSSSKEYHKRHRVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRRRLAGHNQRRRKPQFDYLSGKPYKMLQLHQGTKNLEASFQKRPQFASQDLISCGILYEQTNLSVTRSLEELLTPSNKSCALSLLSVHLQNPPCHSAGNLGPSSHAYGADEKVSKIHLGKNPVDKHEQNESPSSQHGLSSMGAIKNGSTLLSNVDCADHLQVCQTSELLDAKHYVSAEDGDIVDLLQLSSHLQRVEHQRNSFLQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1356 412 Pfam SBP domain 148 221 IPR004333 GO:0003677
Lele52g1356 412 MobiDBLite consensus disorder prediction 330 350 - -
Lele52g1356 412 Gene3D - 138 209 IPR036893 GO:0003677|GO:0005634
Lele52g1356 412 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 99 319 IPR044817 GO:0003677
Lele52g1356 412 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Lele52g1356 412 SUPERFAMILY SBT domain 146 227 IPR036893 GO:0003677|GO:0005634
Lele52g1356 412 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1356 Lele-ChrLele52 17238054 17243301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1356 113 408 SBP-box Gene Family AT1G69170 40.000 4.86e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele52g1356 SBP 2e-31 No_clan