Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1350 ATGCAGGTACGGTGGAGGGGCCATTTGCTTATTGAAACTCTCATGGCTCCCAATGCATCCCCCAATCCAAGAGTTGCCAAGGCCTTCAGCGCTATGAAGGACTTGGGAATTTCTTGTGATGAAGTGAAACCAGTGTTGCAAAAGCTGTTAAGATTGTATGATAACAAATGGGAATATATTGAAGAAGATAACTATCGAACACTTGTAGATGCCTACTTTGAGCTTAAGGAAGATAAGGAAGCAGAAGCCAAGAGAAAAGCTCTCATCAGTCATCATGGTGGAGAAAGACAAACTCAATCATTGGTAGATGAAGATGATGTGCTTTTGTTAACCACCGACAACTCAAGACAACTATTATCTGCAGAAGAGAATGAAACGCCTCGAAATACTTTTGGACGGGAAATCATTGAATCATCTCAACCTTTGATGAGCAATATGAGACCTAAAATCATTCCTCAATCATTGAAAACAAGAATTAGCGAGGTAGAAAGGATATCAAAGTTGCCTTGCATGGTCGCTGCAGATAGAAAATCAAATTCTGAGAAAGAATCTTCTGCAAGGCATGGGGAAGAACCTGTTGTTAAGCCAAGCTCTGCTCCTATTCGAAGAGAAAATCTACCAAATGGACATTGTAGGAAAGAGATAAAGAAGCCAAAAACTGGACACAATAAATTACATCTTGGATCCAGTTCAACAAGTTGCAGAGGTCCATCGGAGGTTTTGACTAGAAATCATCCTGTCAAGTCGGTACCTTCTCTGAATCGGGATCTGAACAGTGTCATTGACGATTCTGCACAGAATAACAACCCCACAAGCAGAAAGGCTAATAACATTGACATTGCCTCTTCGCCATTGGGAGAAGTGAAAATTTCCTTAAACTGTGACCGCGCACTTGGACGTCCAAACTTCAATATTCCAAACTTAAGTGCTGTTATGAAGTTAGTGGAGGAGAAGTACCTTAAGCCTAGCAATATTGTTGGACCCCAATTTTCTATGGTGAGTTTATTAAACGGTTTGTGTGAGAGTTTCCTTAAATTGGGCATGAATATGAATCAAAAGCGTTCACATCCTGAGTTTAACAATGCAAATAGATTAACAAATGGCCCACAACAAGCTGTTGCTCAAGATGAGGGGAAGCTATTTCGGTTTCTTAATGACATAACAAAAGGCTCAGAAAAAGTCAAGATATCGTTGGTAGATGAGTATGGTATTGGGCAATTGCCAAAGTTTAATTACATGCCACATAATCTAATATATCAGAGTGCTAATGTAAATATTTCACTAGCTCGTATGGCGGATGAAGGTTGCTGCTCAAATTGTTTAGGAGATTGTCTTTCTCAAGCATTACCTTGTGCATGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACGCTGGAGGGCTTGTTAAAAGACGAATTTCTAACATCTTGCATGTCAATGAAAAAGGAACCTCAAGCTCATCAATTGTTGTACTGTCAAGAGTGCCCAATAGAGAGGTCTAAGAATCAATTCATGCCTGAGAAATGCAAGGGGCATCTGATCAGGAAGTTCATTAAGGAATGTTGGAGGAAATGTGGATGTGACGTGCAGTGTGGAAATCGTATAGTATTCTTTTCCGGTGAGGCAAAGGGCTGGGGCCTTAGAACACTTGAAGATTTGCCTAGGGGATCCTTTATATGTGAATATGTGGGTGAAATATTAACCAACATGGAGTTGTATGAAAGAATTGTGCACAAAAATGGCAATGACAGACATACATATCCTTTAACCCTTGATGCAGATTGGGGCTCAGAAGGGGTTTTAAAGGATGAAGAGGCTCTGTGCTTAGATGCAACATATAATGGAAATGTTGCCAGGTTTATCAATCATAGATGCTCAGATGCAAATCTGATTGATATTCCGGTTGAAGTGGAGACTCCCGATCGCCATTATTATCATCTTGCCTTCTTCACTAACAAGAAAGTGAGAGCTTATGAGGAGTTGACGTGGGATTATGGTATTGACTTTGATGATCATGATCACCCTATCAAAGCATTCCAATGTTGTTGTGGGAGCTCATTCTGCCGCCATAAGAACCGGAAAGATTTGTCAGCATTTATTAGGGAAAACATTGCACAGCTCATTCTTCTTGTTGCTGTAAAATTGTATAGCAAACTTACTGCCCTTGCTTTCATATGA 2178 0.4031 MQVRWRGHLLIETLMAPNASPNPRVAKAFSAMKDLGISCDEVKPVLQKLLRLYDNKWEYIEEDNYRTLVDAYFELKEDKEAEAKRKALISHHGGERQTQSLVDEDDVLLLTTDNSRQLLSAEENETPRNTFGREIIESSQPLMSNMRPKIIPQSLKTRISEVERISKLPCMVAADRKSNSEKESSARHGEEPVVKPSSAPIRRENLPNGHCRKEIKKPKTGHNKLHLGSSSTSCRGPSEVLTRNHPVKSVPSLNRDLNSVIDDSAQNNNPTSRKANNIDIASSPLGEVKISLNCDRALGRPNFNIPNLSAVMKLVEEKYLKPSNIVGPQFSMVSLLNGLCESFLKLGMNMNQKRSHPEFNNANRLTNGPQQAVAQDEGKLFRFLNDITKGSEKVKISLVDEYGIGQLPKFNYMPHNLIYQSANVNISLARMADEGCCSNCLGDCLSQALPCACAQETGGEFAYTLEGLLKDEFLTSCMSMKKEPQAHQLLYCQECPIERSKNQFMPEKCKGHLIRKFIKECWRKCGCDVQCGNRIVFFSGEAKGWGLRTLEDLPRGSFICEYVGEILTNMELYERIVHKNGNDRHTYPLTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLAFFTNKKVRAYEELTWDYGIDFDDHDHPIKAFQCCCGSSFCRHKNRKDLSAFIRENIAQLILLVAVKLYSKLTALAFI 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1350 725 ProSiteProfiles SET domain profile. 533 666 IPR001214 GO:0005515
Lele52g1350 725 SMART set_7 533 672 IPR001214 GO:0005515
Lele52g1350 725 Gene3D SET domain 387 691 IPR046341 -
Lele52g1350 725 SMART preset_2 384 526 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele52g1350 725 MobiDBLite consensus disorder prediction 176 190 - -
Lele52g1350 725 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 725 IPR025776 -
Lele52g1350 725 Gene3D - 10 78 IPR043017 -
Lele52g1350 725 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 15 695 - -
Lele52g1350 725 MobiDBLite consensus disorder prediction 224 253 - -
Lele52g1350 725 CDD SET_SETDB-like 408 666 - -
Lele52g1350 725 Pfam SET domain 544 666 IPR001214 GO:0005515
Lele52g1350 725 Pfam Pre-SET motif 387 534 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele52g1350 725 Pfam Ubiquitin-binding WIYLD domain 23 77 IPR018848 GO:0018024
Lele52g1350 725 MobiDBLite consensus disorder prediction 173 253 - -
Lele52g1350 725 FunFam SET-domain containing protein lysine methyltransferase family protein 387 691 - -
Lele52g1350 725 SUPERFAMILY SET domain 395 689 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1350 Lele-ChrLele52 17177046 17181780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1350 518 689 C2H2 Transcription Factor Family AT2G23740 37.097 1.30e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele52g1350 Pre-SET 3.1e-15 No_clan