Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1319 ATGAATCAACATTCAAGCAATAATAATAAGGCCATTGCTGATTCAGGCAAGTTTGAAAGTAATGGTGTTGATGCTGCTGCAAGAAAGAAGAGGAAGAAGAGAGATTTAAGCTCATCAGATTATGGTCTCAGAGAGAACCCCAGAAAGACAAAGAGGTTTGTTCATCATCATCATCCCTTCTTCACTTTACATCATAATAAGGAGAAGTTCTGCAGAGAATGTGGGAAAGGATTTTCTTCTTTGAAAGCTCTATGTGGTCACATGGCTTGTCACTCTGAAAAAGATCAGAAGCAGAATTTTTCAATGATGGATGCTCAATCTGATACTGAAACTTCTGATCCAGAGGATTTGAAGAGAACAAGGTTCATGACCCTTAATAATAACAACCCAACTTCTGCTTCTGTGTCAGAGGGTGAACAAGAAGAAGGAGTAGAAGTGGCTATGTGCTTGATATTGTTGTCTAAGGGTTTTTATAGCCATAATAAAGGTCGTTTTGGTTTGGACAAAGAGTCTAATTCTGATAACTATTCTGCAGTTTTAGAGGCAAAATCAAACTCTGTTGATGCCAGAATTGGTATAAATGATGATTCTGGGTATTCTTCTAGAGATGGTTCAAAAAATGAAGATTCAAATGTTTCAATTCATGGGGTTTTCAGGGATAATGTTTTTAAGGATTATGATGATGTCTTTGAATCCAGGAAGATGATGATGAACAACAGCAGCAGATTGCACAGAAGCAGGAACAGTACTGAATCAAAGAAACTAGTAGTGTTGGGAAATTCAGACAAGTTTGATTCATTTAACAGTGCCAAACAAGAACATCTTGGTCACAATTTGGAGGATGAAGTTTCCTGCAAGAAGAAGAAGAAGAAAAACCAAACCAGTTTTCCTAATCATGACTCAGAAAAATCATATGCTAGTGCTGAGAAAATCACAGACAGTAGTACTGATTCTGATTCTTTTCCTTATTCTTATCAGAAGCCTAAGAGTAGTAACAAGGCCAAGATGAAGAAACTGATGAAGAAGTCAAAGAAAACAAAGGAACATGAGTGCCCAATCTGCAACAGAACTTTCAGATCAGGCCAAGCCTTGGGAGGTCACAAAAGGTCCCATTTTGCAGGTGGATTTGAAGAGAACAAAACTGAAATAGTCAAACAAGAATCTCAATCTCCTTCTTCTTCTCCTGCTGTTATTGTTCCTTGCCTGATTGATCTTAACCTACCTGCTCCTGTTGATGAATAG 1242 0.3776 MNQHSSNNNKAIADSGKFESNGVDAAARKKRKKRDLSSSDYGLRENPRKTKRFVHHHHPFFTLHHNKEKFCRECGKGFSSLKALCGHMACHSEKDQKQNFSMMDAQSDTETSDPEDLKRTRFMTLNNNNPTSASVSEGEQEEGVEVAMCLILLSKGFYSHNKGRFGLDKESNSDNYSAVLEAKSNSVDARIGINDDSGYSSRDGSKNEDSNVSIHGVFRDNVFKDYDDVFESRKMMMNNSSRLHRSRNSTESKKLVVLGNSDKFDSFNSAKQEHLGHNLEDEVSCKKKKKKNQTSFPNHDSEKSYASAEKITDSSTDSDSFPYSYQKPKSSNKAKMKKLMKKSKKTKEHECPICNRTFRSGQALGGHKRSHFAGGFEENKTEIVKQESQSPSSSPAVIVPCLIDLNLPAPVDE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1319 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Lele52g1319 413 MobiDBLite consensus disorder prediction 1 50 - -
Lele52g1319 413 MobiDBLite consensus disorder prediction 362 395 - -
Lele52g1319 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 349 371 IPR013087 -
Lele52g1319 413 Pfam C2H2-type zinc finger 349 371 - -
Lele52g1319 413 Pfam C2H2-type zinc finger 71 93 - -
Lele52g1319 413 MobiDBLite consensus disorder prediction 308 330 - -
Lele52g1319 413 MobiDBLite consensus disorder prediction 1 15 - -
Lele52g1319 413 MobiDBLite consensus disorder prediction 23 48 - -
Lele52g1319 413 SMART c2h2final6 69 91 IPR013087 -
Lele52g1319 413 SMART c2h2final6 349 371 IPR013087 -
Lele52g1319 413 MobiDBLite consensus disorder prediction 273 307 - -
Lele52g1319 413 SUPERFAMILY beta-beta-alpha zinc fingers 346 372 IPR036236 -
Lele52g1319 413 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 413 - -
Lele52g1319 413 MobiDBLite consensus disorder prediction 190 211 - -
Lele52g1319 413 ProSitePatterns Zinc finger C2H2 type domain signature. 351 371 IPR013087 -
Lele52g1319 413 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Lele52g1319 413 MobiDBLite consensus disorder prediction 273 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1319 Lele-ChrLele52 16850837 16852161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1319 39 413 C2H2 Transcription Factor Family AT1G26610 35.172 4.60e-46 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele52g1319 zf-C2H2_6 2.8e-11 CL0361