Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1294 ATGGGTAGGTCACTTTGCTGTGAGAAAGTGGGGTGGAAGAAAGGGCCATGGACTCCCGAAGAAGACCAGAAGCTGGTTGCTTACATTGAACAACATGGCCATGGAAGCTGGCGTGCTTTGCCTGCCAAAGCTGGACTTGACAGATGTGGGAAAAGTTGCAGATTGAGATGGACTAATTATCTCAGACCTGATATTAAACGAGGAAAGTTCAGCTTGCAAGAAGAGAGAACCATTATTCAACTTCATGCTCTTCTTGGAAACAGATGGTCAGCAATAGCGGCTCCCTTGCCTAAGAGAACAGACAATGAAATCAAGAACTATTGGAACACTCGTCTCAAGAGGAGGCTCGCAAAAATGGGAATCGACCCGGCCACGCACCGGCCTAAAGTTGATGCCGGCGGCTGCCCGGCTAGCTCGAGCCTCAGCCACATGGCTCAGTGGGAGAGTGCCCGGCTTGAAGCTGAAGCCAGGCTGATCATCGGAGAAAGAACGAATTTACAAGACGACGACATTATGGTGGCAGTGGAGGCATTTATGGGAGAAAGGTACAAGAACGTTCAAGTAAATTTACAAGAAGTAATGTCGTCAAACAGTATAACGGAAGGGTTAAACAGTGAAGATCATCCCGATGATGTGCTTGTTTTCGAATCCAATGAGAACATGAGCACCTTGGGGTTCATGGATATTAATGGCAAAGAAGAAAGCATGATTTGTGGCGGGAACACAAACTTTGAGGACAAGAATCATTACTGGAACAGCATATGTAGTACCCAAACTGTTAAAAATTGGTAG 792 0.4646 MGRSLCCEKVGWKKGPWTPEEDQKLVAYIEQHGHGSWRALPAKAGLDRCGKSCRLRWTNYLRPDIKRGKFSLQEERTIIQLHALLGNRWSAIAAPLPKRTDNEIKNYWNTRLKRRLAKMGIDPATHRPKVDAGGCPASSSLSHMAQWESARLEAEARLIIGERTNLQDDDIMVAVEAFMGERYKNVQVNLQEVMSSNSITEGLNSEDHPDDVLVFESNENMSTLGFMDINGKEESMICGGNTNFEDKNHYWNSICSTQTVKNW 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1294 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele52g1294 263 FunFam MYB transcription factor 68 129 - -
Lele52g1294 263 FunFam MYB-related transcription factor 13 66 - -
Lele52g1294 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Lele52g1294 263 Gene3D - 69 116 - -
Lele52g1294 263 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele52g1294 263 SMART sant 13 63 IPR001005 -
Lele52g1294 263 SMART sant 66 114 IPR001005 -
Lele52g1294 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele52g1294 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 195 - -
Lele52g1294 263 Gene3D - 13 66 - -
Lele52g1294 263 CDD SANT 16 61 IPR001005 -
Lele52g1294 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele52g1294 263 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lele52g1294 263 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele52g1294 263 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1294 Lele-ChrLele52 16037487 16040192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1294 1 158 MYB Transcription Factor Family AT5G15310 79.141 3.04e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele52g1294 Myb_DNA-binding 1.1e-15 CL0123