Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1284 ATGGTCAAAGTTGTGGTGTGTGCGCGCGCCCTATCTACCCTCTCAGCCCAATCCCATAATTTCCTTGTCTATAAATTAGGTCACACCTCCTCACAACTTCCCTCATCTTCTCTTACCCGTTGCTCTGCTTGGTTCTTTCAAGCTTCTCTGTCAAAGAAAATCAAAATGGCTCCCATCGGGTTGCTTGTCGTTGGAATGGCTTTCCTCACGGTGGTTTCCTCAGCCCATGGCTACGGCGGAGGTTGGACGAACGCTCACGCTACCTTCTATGGAGGAAGTGACGCGTCAGGGACGATGGGTGGTGCTTGTGGGTATGGGAATCTTTACAGCCAAGGGTATGGAACTAACACTGCTGCTCTGAGCACAGCTCTGTTCAACAATGGCCTGAGCTGTGGTTCTTGTTTTGAGATTAAGTGTGCAAATGATGCCAAATGGTGCCTACCTGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAATAATGCCTTACCCAACAATGCCGGTGGCTGGTGCAACCCTCCCCTCCAACACTTTGACCTCGCCCAGCCCGTCTTCCTCCGTATTGCCCAGTACCGCGCCGGCATCGTCCCGGTTGCTTACCGAAGGGTGCCCTGTAGGAGAAAGGGAGGAATCAGGTTCACCATCAATGGACACTCCTACTTCAACTTGGTGCTCGTCACCAACGTTGGCGGCGTCGGAGACGTACACGCGGTGGCCATCAAGGGGTCCAGAACCGGGTGGATGGCAATGTCAAGAAACTGGGGACAGAACTGGCAGAGCAACAACTACCTTAACGGACAAAGATTGTCGTTTAAGGTTACAACAAGTGATGGTCGCACTGTCGTGTCTAACAACGTTGCTCCAGCAGGTTGGTCCTTTGGCCAAACCTTCACCGGGGCTCAGTTTCACTGA 918 0.5272 MVKVVVCARALSTLSAQSHNFLVYKLGHTSSQLPSSSLTRCSAWFFQASLSKKIKMAPIGLLVVGMAFLTVVSSAHGYGGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIKCANDAKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVAYRRVPCRRKGGIRFTINGHSYFNLVLVTNVGGVGDVHAVAIKGSRTGWMAMSRNWGQNWQSNNYLNGQRLSFKVTTSDGRTVVSNNVAPAGWSFGQTFTGAQFH 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1284 305 Pfam Lytic transglycolase 117 202 IPR009009 -
Lele52g1284 305 Pfam Expansin C-terminal domain 213 290 IPR007117 -
Lele52g1284 305 Gene3D - 212 305 IPR036749 -
Lele52g1284 305 FunFam Expansin 72 208 - -
Lele52g1284 305 PANTHER EXPANSIN-A15 66 304 IPR002963 GO:0009664
Lele52g1284 305 PRINTS Expansin signature 223 244 IPR002963 GO:0009664
Lele52g1284 305 PRINTS Expansin signature 151 161 IPR002963 GO:0009664
Lele52g1284 305 PRINTS Expansin signature 287 303 IPR002963 GO:0009664
Lele52g1284 305 PRINTS Expansin signature 170 187 IPR002963 GO:0009664
Lele52g1284 305 PRINTS Expansin signature 258 279 IPR002963 GO:0009664
Lele52g1284 305 PRINTS Expansin signature 139 150 IPR002963 GO:0009664
Lele52g1284 305 PRINTS Expansin signature 187 200 IPR002963 GO:0009664
Lele52g1284 305 PRINTS Expansin signature 112 126 IPR002963 GO:0009664
Lele52g1284 305 PRINTS Expansin signature 211 223 IPR002963 GO:0009664
Lele52g1284 305 SMART dpbb_1 117 202 IPR007112 -
Lele52g1284 305 Gene3D - 67 208 IPR036908 -
Lele52g1284 305 SUPERFAMILY Barwin-like endoglucanases 81 230 IPR036908 -
Lele52g1284 305 FunFam Expansin 212 304 - -
Lele52g1284 305 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 100 212 IPR007112 -
Lele52g1284 305 PRINTS Expansin/Lol pI family signature 195 211 IPR007118 GO:0005576
Lele52g1284 305 PRINTS Expansin/Lol pI family signature 99 117 IPR007118 GO:0005576
Lele52g1284 305 PRINTS Expansin/Lol pI family signature 81 96 IPR007118 GO:0005576
Lele52g1284 305 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Lele52g1284 305 PRINTS Expansin/Lol pI family signature 287 301 IPR007118 GO:0005576
Lele52g1284 305 PRINTS Expansin/Lol pI family signature 121 139 IPR007118 GO:0005576
Lele52g1284 305 SUPERFAMILY PHL pollen allergen 209 301 IPR036749 -
Lele52g1284 305 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 222 301 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1284 Lele-ChrLele52 14744715 14746388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1284 56 305 Expansin Gene Family AT2G03090 82.072 8.30e-156 434