Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1278 ATGGCTGGACCAGAAGACAAGCGTCATGCTTCCCTTGAGGAAGGGAAGAAGAGGAAGAGAAAGAGGAATAAGCCACGGAAATCTGCAACTGAGGAGCATGTGGAGGAAGAAGGCGAAGAAGCCAGAGAGAATTATGGGGATAAGCAGCCTGCTGAGTTGGGTAAGAAAAAGAAGGATAAAAAGGTGAAGCGCGGTGTAGGAGTGAGTGAAGGGGAAGAGGGCGGCGATGAGAATGAGGAGGAGGAGGAGGAGGGTGGCGAACAAAGGAAGTTAAAGAATGCTGGCTCTGGAATTTTGAGCACTGTATCTTTTGATTCTCTGGGATTGTCTGAACCTACTTTTAAGGCCATTAAGGACATGGGATTCGAGCATACGACTCAGAGAGCTGCAATGGAGATTCAAGCGAGAGCAATTTCTCCGCTCTTGATTGGGAAAGATGTTCTTGGTGCTGCAAGGACGGGTTCTAGAAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGTTGTACCATGCTCAATTCACTTCGCAAAATGGAACTGGTGTCGTTGTTATATGCCTTACTAGGGAGCTTGCAATACAGACACATGCTGTAGCAAAAGAACTTCTCAAGTATCATTCCCAGACTCTTGCATTGGTTATTGGAGGTTCAGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGCGGTAAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATATAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAATCACATTATTAAAATATTCTCAAAGACAACTCCTATCTATGTTGATGTAGAAGATGGGAGAACCAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTTTTGTTCCCTACCTTCTCAATTACATACAGATTGATTGCTATAATATACATGGAAAACAAAAGCAGCAAACACGTACTACTACCTTCTTTAACTTCTGTAAAGCAGAAAAGGGAATTTTGCTCTGTACTGATGTTGCTGCCCGTGGAATCGATATACCTGATGTGGGCTGGATTGTGCAGTATGATCCTCCTGATGAACCTAAGGAATATATCCACAGGGTTGGTCGAACAGCTTGTGGGGAAGGTGGCAAAGGAAATACTTTGCTTTTTCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCAGCAAAGGTTCCTGTGAAAGAATATTTATTTGATGAAAAGCTGTCAAATGTACAATCTCACCTGTGTTCAAAAGGTTACAGAGCATATTATATCACGTTAGTGGATGTCAGGACTAAGATAGAGTATCTAGATAAGGATACCGAGTTTCAGATTGAGAACATGAATAGGATGTTGGCTGATCCTCTTGATGGCAGGCTGTGGCAGCTTCATTCTGTTTTTCAAATCCACCAAAGATGTGAGGCGTTAGCCGTATTCATGTCGTCTTCTGCCATTGGCTTTCTTTTGCATGACAAAAGAAACATGGGGTTTTATAGATTACTTGAGTGGTTAGATATACTTGTGTATCTGATTCTATTGAGGTCGACTCGTATTTTTGGGTCAAGGTGA 1626 0.4225 MAGPEDKRHASLEEGKKRKRKRNKPRKSATEEHVEEEGEEARENYGDKQPAELGKKKKDKKVKRGVGVSEGEEGGDENEEEEEEGGEQRKLKNAGSGILSTVSFDSLGLSEPTFKAIKDMGFEHTTQRAAMEIQARAISPLLIGKDVLGAARTGSRKTLAFLIPAVELLYHAQFTSQNGTGVVVICLTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIVKAVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMNHIIKIFSKTTPIYVDVEDGRTKVTNEGLQQGYVFVPYLLNYIQIDCYNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGIDIPDVGWIVQYDPPDEPKEYIHRVGRTACGEGGKGNTLLFLIPEELQFLRYLKAAKVPVKEYLFDEKLSNVQSHLCSKGYRAYYITLVDVRTKIEYLDKDTEFQIENMNRMLADPLDGRLWQLHSVFQIHQRCEALAVFMSSSAIGFLLHDKRNMGFYRLLEWLDILVYLILLRSTRIFGSR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1278 541 MobiDBLite consensus disorder prediction 1 94 - -
Lele52g1278 541 SMART ultradead3 126 321 IPR014001 -
Lele52g1278 541 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Lele52g1278 541 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 434 IPR001650 -
Lele52g1278 541 CDD SF2_C_DEAD 314 400 - -
Lele52g1278 541 Gene3D - 79 299 IPR027417 -
Lele52g1278 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 435 IPR027417 -
Lele52g1278 541 MobiDBLite consensus disorder prediction 27 56 - -
Lele52g1278 541 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 305 IPR014001 -
Lele52g1278 541 Pfam Helicase conserved C-terminal domain 311 387 IPR001650 -
Lele52g1278 541 PANTHER RNA HELICASE 41 414 - -
Lele52g1278 541 SMART helicmild6 309 390 IPR001650 -
Lele52g1278 541 Gene3D - 300 405 IPR027417 -
Lele52g1278 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 409 IPR027417 -
Lele52g1278 541 Pfam DEAD/DEAH box helicase 132 285 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1278 Lele-ChrLele52 14202962 14209299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1278 103 408 Eukaryotic Initiation Factors Gene Family AT3G13920 27.548 7.82e-30 119