Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1268 ATGAGTTCCGACCACTCCGCCCCCGGCGGCGTCGATTCGTCCGGCGGAAGTACCTCGGGGCAGGATAGGGACAAGCTGAAGGATAAGGCCAGAGTGAATCGCACCTCGTTGATCTTGTGGCATGCCCATCAAAACGACGCCGCTGCTGTTCGCAAGCTTCTGGAGGAGGATCGGACGCTGGTTAACGCTAGAGATTATGACAATCGTACCCCTCTTCACGTTGCTTCTCTTCATGGTTGGGTCGATGTTGCTAAGTGCTTGCTTGAATATGGTGCCGATGTCAACGCGCAAGATCGCTGGAGAAACACTCCTCTAGCTGATGCAGAAGGTGCTCAAAGGCTTACCATGGTGGAGCTTTTAAAATCTCATGGAGGAATGTCTTTTGGTCAAAATGGGAGCCATTTTGAGTCAAAGCGTGTTGCTCCTCCACTGCCTAACAAGTGTGATTGGGAAATAGACCCTTCTGAGCTGGACTTCACGAATTCAGCTCGCATTGGAAAGGGATCTTTTGGTGAAATTTTGAAAGCACATTGGCGGGGAACACCTGTTGCTGTCAAACGCATTCTTCCATCTCTCTCAGATGATAGATTGGTGATCCAGGACTTCAGGCATGAAGTTAAATTGCTAGTGAAGGTTCGACACCCTAATATAGTCCAGTTTCTTGGAGCTGTAACCGAAAAAAAGCCTCTTTTGTTAATTACTGAGTATCTAAGAGGGGGTGATCTTCATCAGCATCTCAAGGAAAAAGGCACACTTAGTCCTTTAACAGCTGTAAACTTTGCTTTGGATATTGCCAGAGGGATGGCCTATCTTCATAATGAACCAGATGTTATAATTCATCGAGACCTAAAGCCAAGGCAAGTTGATTATCTGAATGTTCTTTTAGTCAATTCTAGTGCAGACCATTTGAAAGTTGGAGATTTTGGACTGAGTAAGCTTATCAAGGTTAAGAATTCTCATGATGTTTACAAGATGACTGGTGAAACTGGAAGCTGGGAATCACCTTTTGCAAGTTATGAACCTTACGATGCGGCCAAACACGTGGCAGAAGGAGACAGACCCACTATTCTTACAAAGGGTTTTACCCCTGAACTGCGACAATTCCTACTTGCTCTTAGATTAACCGTGGAGTGTTGGAGTGCCGATATGAATCAAAGACCTTCCTTCTTGGAGATCCTTAAACGGCTTGAGAAGATCAAGGAAAATCTACCTGCAGATCATCACCGGCACTTGTTCTCTTCCTAA 1245 0.457 MSSDHSAPGGVDSSGGSTSGQDRDKLKDKARVNRTSLILWHAHQNDAAAVRKLLEEDRTLVNARDYDNRTPLHVASLHGWVDVAKCLLEYGADVNAQDRWRNTPLADAEGAQRLTMVELLKSHGGMSFGQNGSHFESKRVAPPLPNKCDWEIDPSELDFTNSARIGKGSFGEILKAHWRGTPVAVKRILPSLSDDRLVIQDFRHEVKLLVKVRHPNIVQFLGAVTEKKPLLLITEYLRGGDLHQHLKEKGTLSPLTAVNFALDIARGMAYLHNEPDVIIHRDLKPRQVDYLNVLLVNSSADHLKVGDFGLSKLIKVKNSHDVYKMTGETGSWESPFASYEPYDAAKHVAEGDRPTILTKGFTPELRQFLLALRLTVECWSADMNQRPSFLEILKRLEKIKENLPADHHRHLFSS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1268 414 PIRSF ILK 1 334 - -
Lele52g1268 414 PIRSF ILK 331 414 - -
Lele52g1268 414 Gene3D Transferase(Phosphotransferase) domain 1 238 327 - -
Lele52g1268 414 SUPERFAMILY Ankyrin repeat 38 125 IPR036770 -
Lele52g1268 414 MobiDBLite consensus disorder prediction 1 20 - -
Lele52g1268 414 SMART ANK_2a 67 96 IPR002110 GO:0005515
Lele52g1268 414 ProSiteProfiles Protein kinase domain profile. 159 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1268 414 Pfam Protein tyrosine and serine/threonine kinase 162 327 IPR001245 GO:0004672|GO:0006468
Lele52g1268 414 ProSiteProfiles Ankyrin repeat region circular profile. 67 99 - -
Lele52g1268 414 Gene3D - 11 133 IPR036770 -
Lele52g1268 414 ProSiteProfiles Ankyrin repeat profile. 67 99 IPR002110 GO:0005515
Lele52g1268 414 SUPERFAMILY Protein kinase-like (PK-like) 158 408 IPR011009 -
Lele52g1268 414 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 75 401 - -
Lele52g1268 414 Pfam Ankyrin repeats (3 copies) 32 98 IPR002110 GO:0005515
Lele52g1268 414 ProSitePatterns Protein kinases ATP-binding region signature. 165 186 IPR017441 GO:0005524
Lele52g1268 414 FunFam serine/threonine-protein kinase STY46-like 152 238 - -
Lele52g1268 414 MobiDBLite consensus disorder prediction 1 27 - -
Lele52g1268 414 Gene3D Phosphorylase Kinase; domain 1 140 237 - -
Lele52g1268 414 Gene3D Transferase(Phosphotransferase) domain 1 328 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1268 Lele-ChrLele52 12037759 12053554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1268 1 414 MAP Kinase Kinase Kinase AT1G14000 72.383 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Lele52g1268 PK_Tyr_Ser-Thr 6.8e-35 CL0016