Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1258 ATGCAAGAGTTGGCTAGGAAGGCCTTTGATAATCTCTGGCACGATAGTGATGATAGTGAACCACAACCCAAAATTGTGAGGAGAGGTAGGCCGCCAGGCAAGAACTCAAGAAAGTCATTGGGAATGTCTCCTTCTGAGCGTGTTGCTCCCGATTCTTCCTCAGATGTAACACTTGCTTCGAGAGGAGATAGTGCCAGTGGCCCAAACAATTATAATTTGAGAAAAGGAATAGTGGCTGCTGAGAATGAACCTCCAGTGCTGGCTACAATTGAAGAAGAATTCAAGCAACTAATTGCGGTGGGTTTGAATGTGAAGCATGGCTATACTAGAAGCCTAGCCCATTTTGCTGCCGATCTTGGTCCAGTTGTTTGGAAGATTGCTGCAAGGAAAATTAGCAGTGTTTTACCAGTTGGACAAGAATTTGAAGATGTCGCTGTTGCTAAGGAGGCCACCGTATCATTTAGGCTAACGGGCCAAAGTGACACGCCACCTATCAAAGAACGCAAGTTGAAGAATAAGTGGAAGGAAGGAAGAGAGAAGGACAAGTCGGCGTGGGGTTAAGATTGCGGAGGGAAGGCAATTGCATATACAATTACTGCTGGCCAATCTGGTCAGTTCAAAACAATTCCAAGGGATAAACCATGCATCATTTTGGAAGGTGAAGGCAGAGGGGTTACAACAATTACGTATAGTGACCACCAACAAACAGATACTAGCGCCACGTTCTCTTCCTCTGCAAACAATATAGTTGCAGCTGCAATCACCTTCGAGAACTCACTTGATCTCTCCAATGAAGAATCAGGATTGGACCAAATCATAAGTGGAAAAGATGTGAGAGGACCAGCATTGGCAGCTAGAATATATGGCGATAAATCGGCTTTCTTCAATTGTGGCTTTTTGGGCTTTCAAGATACACTTTGGGATGTCCAAGAGGATGAGACCAGTGGTTTCGTATTTAGAGGAGGGAAAGTTGTGGGAAGCGGTCCGGTCTTTTTAGGGAGAGCTTATGGGTCTCATTCAAGAGTTATATTTCGTGGAACATTTCTAGATTCTGTCGTATCTCCTCAAGGATGGGATGCATGGCGTTACACACAAAATGTGAGTAATTTGATGAATGTTGAAGTTAATTGTATTGGCCTAGGGTCAAATCGGGAAAAACGAGCGCCATGGGAGATGAAGCTCTCTTCTCCTCATTTAAATTAG 1203 0.4422 MQELARKAFDNLWHDSDDSEPQPKIVRRGRPPGKNSRKSLGMSPSERVAPDSSSDVTLASRGDSASGPNNYNLRKGIVAAENEPPVLATIEEEFKQLIAVGLNVKHGYTRSLAHFAADLGPVVWKIAARKISSVLPVGQEFEDVAVAKEATVSFRLTGQSDTPPIKERKLKNKWKEGREKDKSAWGXDCGGKAIAYTITAGQSGQFKTIPRDKPCIILEGEGRGVTTITYSDHQQTDTSATFSSSANNIVAAAITFENSLDLSNEESGLDQIISGKDVRGPALAARIYGDKSAFFNCGFLGFQDTLWDVQEDETSGFVFRGGKVVGSGPVFLGRAYGSHSRVIFRGTFLDSVVSPQGWDAWRYTQNVSNLMNVEVNCIGLGSNREKRAPWEMKLSSPHLN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1258 400 MobiDBLite consensus disorder prediction 1 72 - -
Lele52g1258 400 Gene3D - 198 310 IPR012334 -
Lele52g1258 400 SUPERFAMILY Pectin lyase-like 195 391 IPR011050 -
Lele52g1258 400 Pfam Pectinesterase 328 391 IPR000070 GO:0030599|GO:0042545
Lele52g1258 400 Pfam Pectinesterase 199 308 IPR000070 GO:0030599|GO:0042545
Lele52g1258 400 MobiDBLite consensus disorder prediction 1 27 - -
Lele52g1258 400 Gene3D - 311 398 IPR012334 -
Lele52g1258 400 MobiDBLite consensus disorder prediction 38 71 - -
Lele52g1258 400 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 208 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1258 Lele-ChrLele52 10700028 10708179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1258 198 362 Carbohydrate Esterase AT2G19150 33.790 8.00e-24 98.6