Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1250 ATGGAGGGTCCTCCTTCCAACGATTTTTGTTCGGTGTGCCATGGAGACTATAACAATCCTTGCCAAGCCAATTGCTCTCACTGGTTTTGCGGAAGTTGTATTATGCAAGTGTGGCACCATGGATCAACTGTTAGGCCATGTAGATGCCCGTTATGTCGTCGTCAAATCACGTTGCTAGTTCCAACTGAGGACTTTTTAAGGCAGCGTTATGACCCTGAAGTTGCTGAGGTTCTCCGAAATATTGAAGCATATAATCGTTTGTTTGGGGGTCAGGCAACTGGTCTTTTTCAGAGAATGCAAGATCTTCCTTTTCTCTTGCGAAGGCTGCTGCGGGAGCTGATGGATCCTCACCGGACACTTCCTCTTGTCATTAAGGCTCGTGTCTATATTGCAATGATATCAAGTTTCGCTTACATTGTAAGCCCTGTTGACATTATCCCAGAAGCGGTATTAGGAATATTTGGTTTGTTGGATGATCTCCTTATTGCGCTCATCTGCTTCCTCTATGTTGCTTCTGTTTATAGATCAGTTCTCTATTTCCGTCATGGGGGCTCTCGTGTTTGA 564 0.4486 MEGPPSNDFCSVCHGDYNNPCQANCSHWFCGSCIMQVWHHGSTVRPCRCPLCRRQITLLVPTEDFLRQRYDPEVAEVLRNIEAYNRLFGGQATGLFQRMQDLPFLLRRLLRELMDPHRTLPLVIKARVYIAMISSFAYIVSPVDIIPEAVLGIFGLLDDLLIALICFLYVASVYRSVLYFRHGGSRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1250 187 PANTHER UNCHARACTERIZED 2 182 IPR038896 GO:0061630
Lele52g1250 187 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
Lele52g1250 187 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Lele52g1250 187 Pfam Protein of unknown function (DUF1232) 130 164 IPR010652 -
Lele52g1250 187 SMART ring_2 10 52 IPR001841 -
Lele52g1250 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 101 IPR013083 -
Lele52g1250 187 SUPERFAMILY RING/U-box 7 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1250 Lele-ChrLele52 10434007 10457592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1250 35 185 C3H Transcription Factor Family AT1G72175 74.834 6.22e-68 202