Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1245 ATGTGGAACTTCTGGACCAAGGGTTGCATTTTTATGGTGTGTATTTCTGCAATTTCTGGGGCTTTATCTCAGGAACCCGAACTCGGATCTACCCGTGTTGTCTTTCAGACAAATTACGGGGATATTGAATTCGGTTTCTTTCGCACAGTTGCACCCAAAACTGTTGATCACATTTTTAAACTTGTGCGACTTGGAGGCTATAACACAAATCATTTTTTCCGGATAAGGGCTGTGGCCCAGGTAGCGGATGTTATGGGTGGAAGATCCGCGCCCATGAATGAAGAACAAAAAAGAGAAGCTGAAAAGACTGTAGTTGGTGAATTTAGCCAAGTTAAACATGTTAGAGGCATTCTTTCTATGGGAAGGTATAGTGATCCAGACAGTGGATCATCCTCATTTTCAATGCTTCTAGGAGATGCCCCTCATCTTGATGGCCAGTATGCAATATTTGGAAGAGTCACTAAAGGTGATGGTACATTGAGAAAGCTTGAGGAACTACCTACTCATAAAGAGGGGATATTTGTTATGCCAACAGAGCGTATTACTATTCTGTCATCCTATTACTACGACACCGAGAGTGAAGATTGTGAACGAGACAGATCGATTTTGAAACGCAGGCTAGCTGCTTCATCTGTTGAAATCGAAAGACAGGGTGGCGTGTCCACTTGGAGGATCTTTGGCGATACTGATAAAGCATCTCTAGTGTTTAATGCAGTTCTAGAAAAGCTTTCATGGCTTATGGCAATGGCAGAGCGTACAAGGTCCACAATTCAGTTTCATCCTTTTTTGGGACCAATGGTGGAAAAGGATTCAATATCCGAGGATGTATTTTCATCCTCCATAAACTCAAAGGTCGTCGACGACTGA 867 0.4268 MWNFWTKGCIFMVCISAISGALSQEPELGSTRVVFQTNYGDIEFGFFRTVAPKTVDHIFKLVRLGGYNTNHFFRIRAVAQVADVMGGRSAPMNEEQKREAEKTVVGEFSQVKHVRGILSMGRYSDPDSGSSSFSMLLGDAPHLDGQYAIFGRVTKGDGTLRKLEELPTHKEGIFVMPTERITILSSYYYDTESEDCERDRSILKRRLAASSVEIERQGGVSTWRIFGDTDKASLVFNAVLEKLSWLMAMAERTRSTIQFHPFLGPMVEKDSISEDVFSSSINSKVVDD 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1245 288 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 33 185 IPR002130 GO:0000413|GO:0003755
Lele52g1245 288 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 34 188 IPR002130 GO:0000413|GO:0003755
Lele52g1245 288 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Lele52g1245 288 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413|GO:0003755
Lele52g1245 288 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 46 61 IPR002130 GO:0000413|GO:0003755
Lele52g1245 288 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 9 217 IPR044233 -
Lele52g1245 288 Gene3D - 21 197 IPR029000 -
Lele52g1245 288 SUPERFAMILY Cyclophilin-like 31 190 IPR029000 -
Lele52g1245 288 CDD cyclophilin 34 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1245 Lele-ChrLele52 10135238 10149555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1245 33 186 U-box Gene Family AT5G67530 28.049 1.18e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1245 52 10135238 10149555 Lele52g1245 52 10135238 10149555 ECH
Lele50g1286 50 11439756 11451079 Lele52g1245 52 10135238 10149555 hybridization