Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1235 ATGGCTTTCTTCCCAGCAAATTTCATGCTTCAAACCTCTCACCCAGAAGATCATCGTCATCCTCCTCCTCCTTCTCTCAACTCGCTCCTGACTTCATGTGCTCCACAAGATTATCATCACCATTGGGGGCCTTCTTTTCTGGGTAGGAGATGCATGTCATTTTCAGGGATTGAACTGGGTGGTGAAGAAGCGAATAATAATAATAATGGTGGTGGTGAGGAAGATTTGTCTGATGATGGGTCTCAAGCGGGTGTTAAGAAGAGGAGGCTTAACATGGAACAAGTTAAGACACTTGAGAAGAGCTTTGAGCTGGGAAATAAGCTTGAACCAGAGAGAAAAATGCAGCTTGCAAGGGCTCTAGGATTGCAGCCCAGACAAATTGCTATATGGTTTCAGAACAGAAGAGCAAGGTGGAAGACAAAGCAGCTCGAGAAAGACTATGATGTTCTTAAAAGACAATATGATTCTCTCAAAGCTGATAATGATGCTCTTCGAGCTCAGAACCAGAAACTCCAAGCTGAGATATTTGCATTGAAGAACAGAGAGCCAACTGAGTCAATAAACCTCAACAAAGAAACAGAGGGATCTTGCAGCAACAGAAGTGAGAACAGCTCTGAGATTAGGTTTGATATAACAAGAACACCAGCTCTTGAAGATAGTCCTGATCTATCAACACAACATAACAGTGGCATAACCTTATTATTTCCGAAATCTTCTTCGGCTTCAGTTAGGCCTCCTCCTCCTGCTCCTTCTTCTTCTTCAGGAGGAGTGGCTCACCAGCTCTTTCAAGCTTCTTCAAGACCAGAGCTTCATCAGTGCCAGCAGAATAATAAGGTAGATAATCATCAGATGGTCAAAGAAGAGAATAATAATAATAATAATCATTTGAGCAATATGTTTTGTGGGATCGATGATCAATCTGGGTTCTGGCCATGGTTGGAGCACCAACATTTCAATTGA 960 0.424 MAFFPANFMLQTSHPEDHRHPPPPSLNSLLTSCAPQDYHHHWGPSFLGRRCMSFSGIELGGEEANNNNNGGGEEDLSDDGSQAGVKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDSLKADNDALRAQNQKLQAEIFALKNREPTESINLNKETEGSCSNRSENSSEIRFDITRTPALEDSPDLSTQHNSGITLLFPKSSSASVRPPPPAPSSSSGGVAHQLFQASSRPELHQCQQNNKVDNHQMVKEENNNNNNHLSNMFCGIDDQSGFWPWLEHQHFN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1235 319 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Lele52g1235 319 MobiDBLite consensus disorder prediction 237 258 - -
Lele52g1235 319 Gene3D - 78 147 - -
Lele52g1235 319 Coils Coil 133 181 - -
Lele52g1235 319 SUPERFAMILY Homeodomain-like 80 143 IPR009057 -
Lele52g1235 319 MobiDBLite consensus disorder prediction 62 84 - -
Lele52g1235 319 Pfam Homeodomain 87 139 IPR001356 GO:0003677
Lele52g1235 319 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Lele52g1235 319 Pfam Homeobox associated leucine zipper 141 181 IPR003106 GO:0006355|GO:0043565
Lele52g1235 319 FunFam Homeobox-leucine zipper protein ATHB-13 78 145 - -
Lele52g1235 319 CDD homeodomain 86 142 IPR001356 GO:0003677
Lele52g1235 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 74 224 IPR045224 GO:0003700
Lele52g1235 319 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Lele52g1235 319 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Lele52g1235 319 MobiDBLite consensus disorder prediction 189 207 - -
Lele52g1235 319 SMART HOX_1 84 145 IPR001356 GO:0003677
Lele52g1235 319 MobiDBLite consensus disorder prediction 186 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1235 Lele-ChrLele52 9376843 9378733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1235 1 319 Homeobox Transcription Factor Family AT1G69780 59.813 1.34e-112 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele52g1235 Homeodomain 1.4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1607 49 17858131 17859864 Lele52g1235 52 9376843 9378733 hybridization
Lele50g1277 50 10587809 10589450 Lele52g1235 52 9376843 9378733 hybridization