Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1228 ATGGCCAAGAGACAACTTTTTTTCTTTAGTTTCTTTACAATTCTATTCATTTTCCCGCCATGTATGTCCTTAAGGATAGAAACAGAGGCTCTCCTTCAGTTCAAGAAGCATTTGAAGGACCCTTTGGATTCTTTGTCTTCCTGGACAGATTCTGAGTCTCCCTGTGAATTCAACGGAGTTACTTGTGATAGATTTTCTGGGAAAGTCGTGGAAATTTCGCTGGAAAATAAGTCCATTTCTGGTGAGATTTTTCCATCAATTTTCGCTCTCCAAAACCTCCGAGTTCTATCACTTGCATCAAATTTTATTTCTGGGAAGCTTCTATTTGAAGTAAGCAACTGCAGCGACCTTAGAGTTTTGAACCTAACAGAAAATGAGATGGTTGGGATTTTGCCGGACTTGTCTCAGATGAGAAATCTAAAAGTACTTGACCTTTCTGCAAACTACTTTTCCGGCAGATTCCCAAGCTGGGTTGGAAATCTGACTGGTCTAGTTTCGCTAGGGCTCGGGGAAAATGAATATATTGAGAGTGAAATTCCTGGGACTCTGGGCAATCTGAAGAACTTGACTTGGCTCTATCTTGGTGGTTCTCATTTGAGAGGTGAGATTCCAGAATCAATTTATGAAATGAAGGCTTTGGAGACACTGGATGTTTCCAGAAACATGATCTCTGGGAAACTCTCCAAGTCAATTTGGAAGTTGACAAATCTTTGTAAGATTGAGCTTTTCTCAAATAATTTAACTTGGCAAATCCCAGCTGAGCTGGCAAACTTGACCAAGCTTGAGGAGATTGACCTTTCGATGAACCATATGTATGGTATATTGCCAGAGGTGATTGGTACTATGAAGAATTTGGTTGTTTTTCAACTCTATGAAAACAACTTTTCAGGAGAAATTCCTTTTGGTTTTGGAGATATGCAACATCTTGTTGGATTCTCAATTTATCGAAACAGCTTCTCCGGGAAAATTCCAGAAAATTTCGGCCGATTTTCACCACTGGACAGCATTGATATATCAGAGAATCAATTTTCAGGTGATTTTCCAAAGTTCTTGTGTGAAAACAGAAATTTGAAATTTTTGCTTGCTTTGCAAAATAATTTCTCTGGTGCATTGCCTGAGACTTATGTTACATGTAAATCATTGGAGAGATTCAGGGTGAGCAGAAATCGCTTGTCTGGAAAAATTCCAAATGAGTTGTGGGCACTTCCATTTGTAAAGATAATTGATTTGGCTGACAATAATTTTGAGGGTGATATATCTCCAAAAATCGGGCTTTCTTCTAGCTTAAGCCAGTTAGTTCTAACAAAGAACAAGTTTTCGGGTAAACTTCCTTCCCAACTTGGTAAGCTGATGAATTTGGAGAAGCTATATTTGAACAACAACAATTTCTATGGTGAAATACCAGCTGAAATTGGAGCTCTGAAGCAATTATCATCTTTTCATCTAGAAGAGAATTCATTAACTGGATCAATACCTGTAGAACTTGGCAATTGTGCAAGGCTAGTGGACCTAAATCTTGCTCGGAATTTTCTAACCGGAGCTATTCCTCAGTCAGTTTCACTTATGAGCTCATTGAACTCTCTTAATCTATCTGGCAACAATCTTACAGGCTCAATCCCAGAATGCTTAGTGTCAATGAAATTCAGCTCAATTGATTTTTCCGAAAACCAGTTGTCTGGGAGAATTCCGAGCAATCTTCTAATTATTGGCGGTGATGAAGCTTTTGTTGGAAATCCAGGACTTTGTGTTGAACAAAATTCAAGAACTCTTATGAATTCTGAATTCAACATTTGTACAAGCATACATGGTCAGAAAAGGGTCTTCTCTGATAAGATAGTAATTCTCTGTGTGATTGCTTCTGTCTTGGTCATTGTGTTGGCCGTGTTGCTCGTGAGTTATGGAAGCTTCAACCATGAAAAAGCAGACTTGGAGAAAAATTTGCAAGATCAAAAGGAAACAGATTCAAAATGGAAAATTGCTTCTTTCCACCAAGTTGATCTTAATGTGAATGAAATATGTCATTTGGATGAAGATAATTTGATTGGAACCGGTGGTACTGGAAAGGTATATCGAGTTGACTTGAAGGAAAATGGTTCCACGGTGGCCGTAAAACAAATATGGAAAGGAGATGGTGTGAAAATTTTGGCAGCAGAGATGGAGACTTTGGGAAAAATCAGGCATAGAAATATACTTAAGCTTTATGCTTGTTTGTTTAAAGGAGGATCAAACTATTTAGTGTTAGAGTACATGTCAAATGGTAATCTTTTTCAAGCTCTTCACAGACAGATAAAGGGTGGGAAACCAGAATTGGATTGGTACCAGAGATATAAAATTGCACTGGGTACTGCAAAAGGAATTGCATATTTACATCATGATTGTTCTCCACCTATCATTCACAGAGACATAAAATCTAGTAACATTTTGCTCGACGAGGATTATGAGGCGAAAATGGCTGATTTTGGGGTCGCAAAATTCGCAGAGAAAACTGATCAACAGCTGGGTTTTAGCTGTCTTGCTGGTACTCATGGTTATATTGCTCCTGAGCTTGCTTATACACGCCAAGTCGCTGAAAAGAGTGATGTGTATAGTTTTGGAGTGGTGTTGCTAGAATTACTTACAGGAAGGGAACCCATTGAAGAGGAATACGGCGAAGGGAAGGATATTGTATATTGGGTTATGACTAACCTCGATGACCGTGAGAGCGCGATCAAGATACTCGATGATAAAATAGCATCGGAGTCCGTTGAAGACGAAATGATTAAGGTCTTGAAAGTTGCTATCCACTGCACAAATAAGCTCCCTTCTTTGCGCCCTACTATGAGAGATGTTGTCAAGATGCTTATTGATGCTTATTCTAGCCCTTTTCAATCTCCAGACAGCGATTTTGAGAAAGATGTGAAGGGTTCTATCTAG 2913 0.3886 MAKRQLFFFSFFTILFIFPPCMSLRIETEALLQFKKHLKDPLDSLSSWTDSESPCEFNGVTCDRFSGKVVEISLENKSISGEIFPSIFALQNLRVLSLASNFISGKLLFEVSNCSDLRVLNLTENEMVGILPDLSQMRNLKVLDLSANYFSGRFPSWVGNLTGLVSLGLGENEYIESEIPGTLGNLKNLTWLYLGGSHLRGEIPESIYEMKALETLDVSRNMISGKLSKSIWKLTNLCKIELFSNNLTWQIPAELANLTKLEEIDLSMNHMYGILPEVIGTMKNLVVFQLYENNFSGEIPFGFGDMQHLVGFSIYRNSFSGKIPENFGRFSPLDSIDISENQFSGDFPKFLCENRNLKFLLALQNNFSGALPETYVTCKSLERFRVSRNRLSGKIPNELWALPFVKIIDLADNNFEGDISPKIGLSSSLSQLVLTKNKFSGKLPSQLGKLMNLEKLYLNNNNFYGEIPAEIGALKQLSSFHLEENSLTGSIPVELGNCARLVDLNLARNFLTGAIPQSVSLMSSLNSLNLSGNNLTGSIPECLVSMKFSSIDFSENQLSGRIPSNLLIIGGDEAFVGNPGLCVEQNSRTLMNSEFNICTSIHGQKRVFSDKIVILCVIASVLVIVLAVLLVSYGSFNHEKADLEKNLQDQKETDSKWKIASFHQVDLNVNEICHLDEDNLIGTGGTGKVYRVDLKENGSTVAVKQIWKGDGVKILAAEMETLGKIRHRNILKLYACLFKGGSNYLVLEYMSNGNLFQALHRQIKGGKPELDWYQRYKIALGTAKGIAYLHHDCSPPIIHRDIKSSNILLDEDYEAKMADFGVAKFAEKTDQQLGFSCLAGTHGYIAPELAYTRQVAEKSDVYSFGVVLLELLTGREPIEEEYGEGKDIVYWVMTNLDDRESAIKILDDKIASESVEDEMIKVLKVAIHCTNKLPSLRPTMRDVVKMLIDAYSSPFQSPDSDFEKDVKGSI 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1228 970 Coils Coil 633 653 - -
Lele52g1228 970 FunFam Receptor-like protein kinase HSL1 288 591 - -
Lele52g1228 970 ProSitePatterns Protein kinases ATP-binding region signature. 681 704 IPR017441 GO:0005524
Lele52g1228 970 SMART serkin_6 675 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1228 970 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 210 948 - -
Lele52g1228 970 Gene3D Phosphorylase Kinase; domain 1 656 749 - -
Lele52g1228 970 SUPERFAMILY RNI-like 264 566 - -
Lele52g1228 970 SUPERFAMILY L domain-like 51 367 - -
Lele52g1228 970 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Lele52g1228 970 Gene3D Ribonuclease Inhibitor 175 273 IPR032675 -
Lele52g1228 970 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Lele52g1228 970 CDD STKc_IRAK 681 947 - -
Lele52g1228 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672|GO:0006468
Lele52g1228 970 FunFam Leucine-rich repeat receptor protein kinase EMS1 203 287 - -
Lele52g1228 970 Pfam Leucine rich repeat 138 199 IPR001611 GO:0005515
Lele52g1228 970 ProSiteProfiles Protein kinase domain profile. 675 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1228 970 Pfam Leucine Rich Repeat 525 544 IPR001611 GO:0005515
Lele52g1228 970 SUPERFAMILY Protein kinase-like (PK-like) 673 947 IPR011009 -
Lele52g1228 970 FunFam Probable inactive receptor kinase RLK902 24 179 - -
Lele52g1228 970 FunFam Leucine-rich receptor-like protein kinase family protein 665 749 - -
Lele52g1228 970 Gene3D Ribonuclease Inhibitor 274 375 IPR032675 -
Lele52g1228 970 Gene3D Transferase(Phosphotransferase) domain 1 750 963 - -
Lele52g1228 970 Pfam Protein kinase domain 677 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1228 970 Gene3D Ribonuclease Inhibitor 468 590 IPR032675 -
Lele52g1228 970 Gene3D Ribonuclease Inhibitor 376 467 IPR032675 -
Lele52g1228 970 FunFam leucine-rich repeat receptor-like protein kinase TDR 750 958 - -
Lele52g1228 970 SMART LRR_typ_2 522 546 IPR003591 -
Lele52g1228 970 SMART LRR_typ_2 258 281 IPR003591 -
Lele52g1228 970 SMART LRR_typ_2 450 474 IPR003591 -
Lele52g1228 970 SMART LRR_typ_2 186 210 IPR003591 -
Lele52g1228 970 SMART LRR_typ_2 137 161 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1228 Lele-ChrLele52 9191735 9195960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1228 14 960 Receptor kinase-like Gene Family AT1G72180 56.184 0.0 1061
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele52g1228 Pkinase 1.2e-48 CL0016