Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1224 ATGAAGCAGAGGCAACATCAACACGACAAGGAAGAATCGAAGAAGAAGGAGCGTCATATTGTCTCTTGGACTCAAGAGGAGGATGATATACTTAGAGAGCATATTAGCATTCATGGAACAGACAATTGGACAATTATTGCATCTAAATTCAAGGATAAAACGACAAGACAATGCAGAAGAAGGTGGTACACATACTTAAATTCTGATTTCAAAAAAGGAGGGTGGTCACCAGAGGAAGATATGTTATTATGCGAGGCTCAGAAGATATTTGGCAACAGATGGACAGAAATAGCTAAGGTGGTTTCTGGCAGAACGGATAATGCTGTGAAAAACCGCTTCTCCACACTTTGCAAAAAGAGAGCAAAATATGAAGCCTGGGCCAAAGAGAACAACCCTTCATTAATCAATTCAAACAACAAAAGGATCATTTTCCAACAAGTTTACAGTACAAATGGTGTGTCAGAGGCTGCAACATCAATTAAGAAGATGCGGGACCACATCCCTGATGCTGCAGCAAGGATCACCTATGGAGACAGATCACATAAACAATTTGGAACACCACTTAGTCAGCAATGTAGAGTGCCATTTGCAGTATTATCTAATTTCAATGATAACAACTTGCTAGACCAAACTCCTGTTTGCAGTGCCAAGTTCGACAATTACGCCCAAAATAACAAGACTCAAGGAACATTCCTCAAAAAGGATGATCCAAAGATAAGTGTGTTGATGCAACAAGCAGAATTATTAAGCTCACTGGCAGTGAAAGTTAATACAGAAAACATGGACCAGAGTCTTGAGAATGCATGGAAGGTTCTACAAGATTTTTTGAACCGAACAAACAAATCAGATCTTTCAAGATATAAATTAACAAATTTACAGCTTGAAAATCTCAAAAATATGGCGGAGGACATAAAGAGTGGTCACGAGGAAAGCCAACCACATTCAAGGAAACCAGAGGTATATGAGGACTCTCCAAGTAGCTCTGAATATAGTTCAGGATCAACTATGCAGGCCTATTCAGCATGTGATTATTTGGAAGATTCACCACATCAAAATGTTGGAACTGAAGGGAAGCCTATAGAAAGTGAGGAGAAAAAAGGAATTAGTAGTTGCAAGAAACAAGTTCTTTGTGCTTCAACTGCCGATCCAGATATCTTGCCATCTTGTGAGGAACAGATAAATGATGATTTCATTATTTCAGCCTTGTCAAGTACAGAGTTTAGTTCCCCTATTCGAGTTACTCCTCTATTCAGATCCTTAGCTGCAGGAATTCCCAGCCCACAGTTTTCAGAAAGTGAAAGGAACTTTTTGATGAAGACACTGGGAATGGAATCACCATCTCAGAATCAAAGTGCAAAAGCCTCACAACCACCACCCTGCAAAAGAGCATTACTACAAAGTCTATAA 1407 0.3945 MKQRQHQHDKEESKKKERHIVSWTQEEDDILREHISIHGTDNWTIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEAWAKENNPSLINSNNKRIIFQQVYSTNGVSEAATSIKKMRDHIPDAAARITYGDRSHKQFGTPLSQQCRVPFAVLSNFNDNNLLDQTPVCSAKFDNYAQNNKTQGTFLKKDDPKISVLMQQAELLSSLAVKVNTENMDQSLENAWKVLQDFLNRTNKSDLSRYKLTNLQLENLKNMAEDIKSGHEESQPHSRKPEVYEDSPSSSEYSSGSTMQAYSACDYLEDSPHQNVGTEGKPIESEEKKGISSCKKQVLCASTADPDILPSCEEQINDDFIISALSSTEFSSPIRVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSQNQSAKASQPPPCKRALLQSL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1224 468 SUPERFAMILY Homeodomain-like 20 113 IPR009057 -
Lele52g1224 468 MobiDBLite consensus disorder prediction 304 334 - -
Lele52g1224 468 FunFam Transcription factor MYB124 15 71 - -
Lele52g1224 468 CDD SANT 22 66 IPR001005 -
Lele52g1224 468 Gene3D - 10 71 - -
Lele52g1224 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
Lele52g1224 468 Pfam Myb-like DNA-binding domain 23 83 - -
Lele52g1224 468 ProSiteProfiles Myb-like domain profile. 22 66 IPR001005 -
Lele52g1224 468 MobiDBLite consensus disorder prediction 304 323 - -
Lele52g1224 468 CDD SANT 75 116 IPR001005 -
Lele52g1224 468 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Lele52g1224 468 PANTHER MYB PROTEIN-RELATED 22 310 - -
Lele52g1224 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 70 IPR017930 -
Lele52g1224 468 Gene3D - 73 142 - -
Lele52g1224 468 SMART sant 19 68 IPR001005 -
Lele52g1224 468 SMART sant 71 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1224 Lele-ChrLele52 9052144 9058023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1224 61 468 MYB Transcription Factor Family AT1G14350 50.843 1.73e-125 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele52g1224 Myb_DNA-bind_6 2.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1224 52 9052144 9058023 Lele52g1224 52 9052144 9058023 ECH
Lele50g1263 50 9921200 9928818 Lele52g1224 52 9052144 9058023 hybridization