Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1220 ATGGGTAACTGCTTAGATCCTGCGAAAATGAATCTCGCTCAGCACTCCGGAACCACCAATTCTGCTGGCGTATCATCATCACCACCACAAGCTACTTCAAGTTCCAAATTACATGTTCAATCATACAGAGAAAGAAGGAAGGCGTTAAGTGTCGTCCTTCCAATGCCGCCGAGGACGGCGGAGGAGGCCGAGATATTATTGTCGTCACCGAATCTGAGGGCTTTCAGCTTCAACGAACTAAAGAATGCGACAAAGAACTTCAGTAATGAAAACCGAGTTGGAGAAGGAGGATTCGGCTTTGTTTATAAGGGATGGATCGATCTACGCACTTGTACCGCTTCAAAACCCGGTTCAGGAAGCGTCGTTGCCATCAAGAAGCTTAAGCCTCAAGTCTTTCAAGGTCACAAGCAGTGGCTCACTGAAGTGAAGTACCTTGGGCGATTGCATCATCTCAATTTAGTGAAACTAATTGGGTACTGCTTGGAGGGAGAGAACAACAGATTATTGGTCTACGAGTTTATGCCCAAAGGCAGCTTAGAGAATCATCTCTTTAAAAGGGAGCCATTGCAATGGTGTGTGAGGATTAAAGTGGCCACTGGGGCTGCAAGAGGGCTCTCTTTTCTTCACAATGCAGAATCACAAGTCATATATCGCGATTTCAAATCTTCTAATATCCTACTTGATGCCGAGTTTAATGCCAAACTCTCAGATTTGGGGTTAGCAAAGGAGGGTCCTTCTGGGGACAACACTCATGTGTCTACTCAAGTGGTGGGTACTCATGGTTATGCAGCTCCTGAATATGTTGCCACAGGCCATTTAACAGCAAAAAGTGACGTATATAGCTTTGGAGTTGTGCTACTAGAACTCATGACTGGAAGACGAGCTTATGACAAATCAAGAGGTGTTGTGGAACAAACCCTAGTAGAATGGGCAAAACCATATCTAAGAGACAAACGAAAATTGTTTAGGATCATGGACACCAAATTAGGTGGTCGATATCCACAACATGCAGCCTACGGGGCAGCTGACTTGGCACTTCAGTGTCTTAATGTTGAAGCCAAGGCTAGGCCTTCTGTGACTGAGGTTTTAGCTACATTGGAACAAATCAATGAAGTCCTTAGAAACAATAATAATTGTAACAACAACAACAATATTGCTGCATGA 1164 0.4424 MGNCLDPAKMNLAQHSGTTNSAGVSSSPPQATSSSKLHVQSYRERRKALSVVLPMPPRTAEEAEILLSSPNLRAFSFNELKNATKNFSNENRVGEGGFGFVYKGWIDLRTCTASKPGSGSVVAIKKLKPQVFQGHKQWLTEVKYLGRLHHLNLVKLIGYCLEGENNRLLVYEFMPKGSLENHLFKREPLQWCVRIKVATGAARGLSFLHNAESQVIYRDFKSSNILLDAEFNAKLSDLGLAKEGPSGDNTHVSTQVVGTHGYAAPEYVATGHLTAKSDVYSFGVVLLELMTGRRAYDKSRGVVEQTLVEWAKPYLRDKRKLFRIMDTKLGGRYPQHAAYGAADLALQCLNVEAKARPSVTEVLATLEQINEVLRNNNNCNNNNNIAA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1220 387 Gene3D Transferase(Phosphotransferase) domain 1 174 386 - -
Lele52g1220 387 CDD STKc_IRAK 93 369 - -
Lele52g1220 387 SUPERFAMILY Protein kinase-like (PK-like) 64 369 IPR011009 -
Lele52g1220 387 Gene3D Phosphorylase Kinase; domain 1 58 173 - -
Lele52g1220 387 FunFam Serine/threonine-protein kinase BIK1 55 173 - -
Lele52g1220 387 MobiDBLite consensus disorder prediction 1 38 - -
Lele52g1220 387 MobiDBLite consensus disorder prediction 12 38 - -
Lele52g1220 387 FunFam Serine/threonine-protein kinase PBS1 174 384 - -
Lele52g1220 387 PANTHER OS01G0588500 PROTEIN-RELATED 37 370 - -
Lele52g1220 387 Pfam Protein kinase domain 88 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1220 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Lele52g1220 387 ProSitePatterns Protein kinases ATP-binding region signature. 93 126 IPR017441 GO:0005524
Lele52g1220 387 ProSiteProfiles Protein kinase domain profile. 87 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1220 Lele-ChrLele52 8994913 9000665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1220 73 366 Glycoside Hydrolase AT3G07070 51.839 5.19e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele52g1220 Pkinase 1.4e-45 CL0016