LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele52g1200	ATGGCGGCGGGTGGAAAACTATTTGGGTCACCCAACATGACAACACTCTTGCTTCAAAACGAAAGACTTCCTCCTTCTTCTGACGTTCTCGAATCTATCTGGGCTCACACCTCAAACCCAGCTTTCCCAGGATCAAAATCCATGGTGAATTTTGAGAGACTGAGTGGATGCAGAGTGACAGACCGGCCATTTCTGCAAGGATTGGAGAAAGAAGAGACAGGGGAAGAAGATTACGAGATGTGTTTCCATCAAGCTGGGAAGAAGAGGAGACTCACAAGCGAGCAAGTTCAGTTTCTGGAGAAGAACTTCGAGGTGGAGAACAAGCTAGAACCAGAGAGAAAGGTTCAACTAGCGAAGGAGCTTGGGTTGCAGCCAAGGCAAGTTGCTATATGGTTTCAGAACAGAAGAGCAAGATTCAAGACCAAACAGCTTGAGCAAGACTATGGCAAATTAAAAGCTAGCTATGATAAACTCAAGAGTGATCATGACAATCTTATCAAGGAGAACGACAAGTTAAAACAGGAGGTGAAATCCCTAAAAAACAGATTGAATGTGAGAGAGAAAGAGAAAGAAGATTCTCACAAGTCAGAAGCCAATGCAGATCCTGGAGATTCAGAAGCAGTGAATTCGGCAGAAGGAGAGCCACAGGGAGATGGAACCAAAGATCACGGCGGAGCAGTAGCGGCGAAGGGAATAACGTTGTGGAATAAGCAGCAGGAAGACGCGAATTCATCGGCGAAAAGCGACGTGTTGGATTCGGAGGACACGGAGGCGAACCACCATTCGTGGATGCAACAAGAGCCGGCGGATTCGTCGCCGGCGGCGGAAGTTGAAGCTGAAGCAGCGGAACACTCGGATTTCTCACAGGACGAAGGACACGATAACCTGATGAGAAGCAACTTGCTGAATCTGGCGTGCTTCCCGAAGGTGGAAGAAGATGGATGCTACGACGATCCTCCTGAAGGTTGTAACAATTTTGTAATTCCTGTTGAAGATCAAACCTTCTGTTTTTGGCCTTACTGA	1023	0.4731	MAAGGKLFGSPNMTTLLLQNERLPPSSDVLESIWAHTSNPAFPGSKSMVNFERLSGCRVTDRPFLQGLEKEETGEEDYEMCFHQAGKKRRLTSEQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEQDYGKLKASYDKLKSDHDNLIKENDKLKQEVKSLKNRLNVREKEKEDSHKSEANADPGDSEAVNSAEGEPQGDGTKDHGGAVAAKGITLWNKQQEDANSSAKSDVLDSEDTEANHHSWMQQEPADSSPAAEVEAEAAEHSDFSQDEGHDNLMRSNLLNLACFPKVEEDGCYDDPPEGCNNFVIPVEDQTFCFWPY	340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele52g1200	340	MobiDBLite	consensus disorder prediction	277	293	-	-
	Lele52g1200	340	MobiDBLite	consensus disorder prediction	177	201	-	-
	Lele52g1200	340	MobiDBLite	consensus disorder prediction	177	294	-	-
	Lele52g1200	340	PRINTS	Lambda-repressor HTH signature	122	138	IPR000047	GO:0003677
	Lele52g1200	340	PRINTS	Lambda-repressor HTH signature	113	122	IPR000047	GO:0003677
	Lele52g1200	340	Coils	Coil	141	189	-	-
	Lele52g1200	340	FunFam	Homeobox-leucine zipper protein HAT5	80	144	-	-
	Lele52g1200	340	ProSitePatterns	'Homeobox' domain signature.	117	140	IPR017970	GO:0000981\|GO:0006355
	Lele52g1200	340	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	73	260	IPR045224	GO:0003700
	Lele52g1200	340	CDD	homeodomain	87	143	IPR001356	GO:0003677
	Lele52g1200	340	SUPERFAMILY	Homeodomain-like	78	144	IPR009057	-
	Lele52g1200	340	MobiDBLite	consensus disorder prediction	247	261	-	-
	Lele52g1200	340	Pfam	Homeodomain	87	140	IPR001356	GO:0003677
	Lele52g1200	340	Pfam	Homeobox associated leucine zipper	142	183	IPR003106	GO:0006355\|GO:0043565
	Lele52g1200	340	Gene3D	-	81	148	-	-
	Lele52g1200	340	SMART	HOX_1	85	146	IPR001356	GO:0003677
	Lele52g1200	340	ProSiteProfiles	'Homeobox' domain profile.	82	142	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele52g1200	Lele-ChrLele52	8687364	8689062	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele52g1200	44	183	Homeobox Transcription Factor Family	AT3G01470	55.714	1.04e-43	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Lele52g1200		Homeodomain	2.2e-16	CL0123