Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1177 ATGATGAAAGAGGGTTCGTTTGCGAATGGGGGGGCTAATACGGCGCCGTTTAACCTGGCGGATATCTGGCAATTTCCGATGAATGTCGGTGCGGGTCTCGGGGATTCTGGGGGTGGGTTGGGGCTGAGGGGGCCACAGTTCGGGCATAATTTGGGGCCGCCGCCGTTTGGTGATTTTCCGGGTCAGACGAATCGGGATGTAACCGTTAATGATCAAATCAGCTCGGAGCAGAGAGGGAATAATAATAATAACAATAATAGGAAGCGTCGTGATTCCGAGGATGAGTCCACCAAGGGCGTCTCCACCAGTAATGGCGGCAATGGCATGAATGATGGTGGTGAAGGAAAACGGCTTAAAGCTTCAGCGAATAGGAATGAGAGTCGGGAAACTAAAGCTGAAGCAGAGCCCAGTTCAGGAAAGCCTGCGGAGCAAAATAACCAGACAACTCCTCCTGAGCCTCCAAAGCAAGATTACATTCATGTTCGAGCAAGAAGAGGCCAAGCTACTGATAGCCACAGTCTAGCAGAAAGAGCTAGAAGGGAGAAGATAAGTGAGAGGATGAAACTTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCACTGGTCCTTGATGAGATTATAAATTATATCCAATCACTACAGCGCCAAGTTGAGTTCCTGTCTATGAAACTTGAAGCTGTAAATTCAAGACTGAACCCTGGCATCGAAGTCTTTCCTCCTAAAGATTTTGGCCAACAATCATTTGAAACAGATGGCATGGTATTTGGCTCGCAAGCTACAAGAGAGTATAGCCGGGGTTCATCGCCGGAGTGGTTACATATGCAGGTAGGTGGTGGTTTTGAAAGAACGTCTTAG 867 0.4787 MMKEGSFANGGANTAPFNLADIWQFPMNVGAGLGDSGGGLGLRGPQFGHNLGPPPFGDFPGQTNRDVTVNDQISSEQRGNNNNNNNRKRRDSEDESTKGVSTSNGGNGMNDGGEGKRLKASANRNESRETKAEAEPSSGKPAEQNNQTTPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKLLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNPGIEVFPPKDFGQQSFETDGMVFGSQATREYSRGSSPEWLHMQVGGGFERTS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1177 288 MobiDBLite consensus disorder prediction 117 136 - -
Lele52g1177 288 Gene3D - 164 238 IPR036638 GO:0046983
Lele52g1177 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 235 IPR036638 GO:0046983
Lele52g1177 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 217 IPR011598 GO:0046983
Lele52g1177 288 CDD bHLH_AtBPE_like 157 242 - -
Lele52g1177 288 Coils Coil 214 234 - -
Lele52g1177 288 MobiDBLite consensus disorder prediction 139 153 - -
Lele52g1177 288 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Lele52g1177 288 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 258 IPR024097 GO:0006355
Lele52g1177 288 MobiDBLite consensus disorder prediction 38 157 - -
Lele52g1177 288 FunFam Basic helix-loop-helix transcription factor 164 236 - -
Lele52g1177 288 MobiDBLite consensus disorder prediction 83 97 - -
Lele52g1177 288 MobiDBLite consensus disorder prediction 63 82 - -
Lele52g1177 288 SMART finulus 173 223 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1177 Lele-ChrLele52 8288223 8290584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1177 16 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 58.798 9.17e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele52g1177 HLH 4.7e-08 No_clan