Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1175 ATGTCTGCGCATAAGACTTTGTCTTGTTTACTTTTTCTGAGATGTGTCCATCATAGCAGAATCAAGCACGCTTACATCTTAGATGATCCTTTTGACGATCCTCCTCAGCTAGCTGGGTTCATTCCTGACGCTTCCCCAGAAGGAAAGCCAAAAGATGAGTCCATTTGTAGGCCTCTCTTTGGTGTGTTTCTTTCATGGTTTCTTGAAGGGAGCTTATCTGTTATGTGCAGAGTGATGATTCTTGATGAAGTGAGGCTTGAAGATGATTGGGTGCCCATGGATGAACAATTAGATGCAGCAGAGCTTGAAGGGGTTATTAGGTCAAAGGAAGCACATTCTAGGGCTGTTGTACTTGAGAGTGCAAATATTCCTGATGCTGATATCAAGCCTCCTTACAACGTGCTATTTGTTTGTAAATTGAACCCGGTTACTGAGGATAAGGACTTGCATACTATATTTTCACGCTTTGGGACTGTTGTGTCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAGCAGGAATGTGAAGAAGCATATTTTAAGATGGATAATGCTTTGATTGATGACCGAAGGATACATGTGGATTTCAGTCAGAGTGTAGCAAAACTATGGTCACAATATAGGCGCAACGCTCAAACTGGTAAGGGCTGCTTCAAATGTGGTTCTTCAGATCATATGGCCAAAGATTGCACTGAGGATGCTAAGAATAACCAAACGACAAAATACATCTTGAAGGACAACAATGCCCAACGTGGTGGCGATGATGCAAGGTATGAAATGGTTTTTGATGGAGACGGTGAAGATAGTCCGAGGCAAGGAAAGGGACACAGAAAGCATGACAAGGATGACCCAATTAAGAGAAAAAGTATGCATAGGGGTCACAGGGATCAAGACAACCGAGATAGGTATGGTGATAGAAACAGAGGAGGAAGATATGAAAGAAGTGCAAGAGACGTGGATTCCCGTGCTGACCGGAATGATATGGATAAGTATATGGATAGACGTAGAGATGATGGTTATGGTCGGAAAGATGATCGAGACTCTAGGAAGAGATACGATGATGATAGCCATTCGAAGAGACGGACCGGTGCAGATTATAGGAGAAAAACAAATTCTAGCCGTGTGGAGAGAAGGAATGACGGGGACAAGGAGTATAGCAGAGATAGGGAGAAGAGAAAGAGGGATGGTTCAGCTGAAGATGGCCATGAAGACAGGAGGAGAATGGACGAGAGAGATCCTAGGACGAAACATGAAGACCCAGGCAGGCAAGACTCGAAGAATGAGTCCAGAGAAAGAAAAAGAAATGCTAATGATGATGAAGATTACAGACGTCGAAGGGAAGAACGTGGGCAGAGAAGAAAAGATGTGGAATTTGAGGTGATCAACATCGTAGTGACAGGAGATGACTTTAGCAACCTGCAGCAGGCACTAGTTCAATTAACATTTCATCAACTTGTTTGTTCTGAAGACGGTGATCGTCTTGCCACAAGACTTATATCTGCTCTAATGGAGTATTATACTGGTCCTGATGGCAGGGGAACTGTAGATGATATTAGTGGGAGATTAAGAGAGGGTTGTCCAAGCTACTATAAGGAGTCTGATTACAGCTTCTTCTTAGCTGTGGAAGCTTTGGAGAGAGCTGCTGTGACTGTAGATGTTCAAGAAAAGGAGAATCTGGCAAGGGAAGCATTCAATCTCTTAAGTAAAGTTCCACAGTCTGCTGACTTACGGACTGTTTCAAAACGATTTGAGGATTTAAGATTTTATGAAGCCGTGGTGCGCTTACCTCTTCAAAAGGCACAGGCTCTAGACCCTGCAGGTGATGCTCATAATGATGAAATTGATGCAACTGTCAGAGAACAAGCACTTGCAAAGCGTGAACAATGTTATGAAATAATTATAAATGCTTTGCGGTCTCTAAAGGGAGGCGCCCCACAGAAGGAATTTGGTTCCCCCATCAGATCTGCTGCTTCGCAATCCACTCTTGATCCAGCCTCCCGGAAAAAATATATATGTCAGATAGTTCAACTTGGTGTCCAGTCGCCTGATCGAATATTCCATGAGTATTTATACCAGGCTATGATTGATTTGGGTCTTGAGAATGAGTTGTTAGAGTATGGTGGTCCTGATTTGCTGCCCTTTTTGCAAAGTGCTGGTCGTGAAGCTACACAAGAGGTTCGTACTGTGTCCACCACAACTTCTCCCCCGAGGCAATCAGGAGCACCTATGTCATCTAATCAAATCAAGTACTATGAACTTTTGGCACGGTATTATGTCTTGAAGCGGCAACATATGCTGGCAGCTCATGCATTGCTAAGACTAGCTGAGAGGCGTTTTGTTGATGGTGTTCCTACTTTGGAACAGAGGTGCCAATACCTGAGTAATGCAGTTTTACAGGCAAAGAGTGCTAGTAACAGTGATGGCTTGGTTAGCTCTGGTCGGAGTTCCGTCGACAGTGGATTCCTAGATTTGCTTGAAGGGAAGCTTGCTGTTCTTCAGTTTCAAATAAAAATCAAAGAGGAATTGGAGGCTTTTGCATCCAGATCAGAGGTTTTGCCCGCCTTGTCTGATTCTGTCCCAAATGGTTTAGTTCCTGAAATGAGTAACACTGCTGATGCTGATATTGCGAATGTGGCACGAGAGAAAGCCAAAGAGCTATCATCAGATGTAAAGAGTATAACACAATTATATAATGAATATGCTGTTCCTTTTGAGCTCTGGGAGATATGCCTGGAGATGCTGTATTTTTCCAATTATTCCAGCGATGCTGACAGCAACATTTTAAGAGAAACTTGGGCTAGACTTATTGATCAAGCTCTTTCAAGAGGTGGCGTTGCTGAAGCCTGCTCTGCACTCAAAAGGGTTGGTCCACGCATTTATCCAGGCGATGGAGCTGTTATACCACTTGAGACGATCTGTCTTCACCTAGAGAAAGCTGCACTGGAGAGGTGGAGTTCAGGTGCTGAATCCGTGGGAGATGAAGATGTTGCAAGAGCCCGCACATGA 3042 0.4382 MSAHKTLSCLLFLRCVHHSRIKHAYILDDPFDDPPQLAGFIPDASPEGKPKDESICRPLFGVFLSWFLEGSLSVMCRVMILDEVRLEDDWVPMDEQLDAAELEGVIRSKEAHSRAVVLESANIPDADIKPPYNVLFVCKLNPVTEDKDLHTIFSRFGTVVSAEIIRDHKTGDSLCYAFIEFEDKQECEEAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRNAQTGKGCFKCGSSDHMAKDCTEDAKNNQTTKYILKDNNAQRGGDDARYEMVFDGDGEDSPRQGKGHRKHDKDDPIKRKSMHRGHRDQDNRDRYGDRNRGGRYERSARDVDSRADRNDMDKYMDRRRDDGYGRKDDRDSRKRYDDDSHSKRRTGADYRRKTNSSRVERRNDGDKEYSRDREKRKRDGSAEDGHEDRRRMDERDPRTKHEDPGRQDSKNESRERKRNANDDEDYRRRREERGQRRKDVEFEVINIVVTGDDFSNLQQALVQLTFHQLVCSEDGDRLATRLISALMEYYTGPDGRGTVDDISGRLREGCPSYYKESDYSFFLAVEALERAAVTVDVQEKENLAREAFNLLSKVPQSADLRTVSKRFEDLRFYEAVVRLPLQKAQALDPAGDAHNDEIDATVREQALAKREQCYEIIINALRSLKGGAPQKEFGSPIRSAASQSTLDPASRKKYICQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQSAGREATQEVRTVSTTTSPPRQSGAPMSSNQIKYYELLARYYVLKRQHMLAAHALLRLAERRFVDGVPTLEQRCQYLSNAVLQAKSASNSDGLVSSGRSSVDSGFLDLLEGKLAVLQFQIKIKEELEAFASRSEVLPALSDSVPNGLVPEMSNTADADIANVAREKAKELSSDVKSITQLYNEYAVPFELWEICLEMLYFSNYSSDADSNILRETWARLIDQALSRGGVAEACSALKRVGPRIYPGDGAVIPLETICLHLEKAALERWSSGAESVGDEDVARART 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1175 1013 MobiDBLite consensus disorder prediction 271 463 - -
Lele52g1175 1013 FunFam Nuclear pore complex protein NUP155 549 709 - -
Lele52g1175 1013 Gene3D - 475 538 - -
Lele52g1175 1013 SMART c2hcfinal6 228 244 IPR001878 GO:0003676|GO:0008270
Lele52g1175 1013 FunFam Peptidyl-prolyl cis-trans isomerase 76 213 - -
Lele52g1175 1013 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 205 IPR000504 GO:0003723
Lele52g1175 1013 Gene3D - 548 709 IPR042533 -
Lele52g1175 1013 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Lele52g1175 1013 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 483 1011 IPR004870 GO:0005643|GO:0006913|GO:0017056
Lele52g1175 1013 SMART rrm1_1 134 207 IPR000504 GO:0003723
Lele52g1175 1013 FunFam Nuclear pore complex protein NUP155 712 809 - -
Lele52g1175 1013 Gene3D - 94 214 IPR012677 -
Lele52g1175 1013 SUPERFAMILY RNA-binding domain, RBD 123 226 IPR035979 GO:0003676
Lele52g1175 1013 ProSiteProfiles Zinc finger CCHC-type profile. 229 244 IPR001878 GO:0003676|GO:0008270
Lele52g1175 1013 CDD RRM_PPIL4 130 212 - -
Lele52g1175 1013 Pfam Zinc knuckle 228 244 IPR001878 GO:0003676|GO:0008270
Lele52g1175 1013 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 532 947 IPR007187 -
Lele52g1175 1013 Gene3D - 221 303 - -
Lele52g1175 1013 Gene3D Nucleoporin, helical domain, central subdomain 712 809 IPR042537 -
Lele52g1175 1013 Gene3D - 830 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1175 Lele-ChrLele52 8226806 8235310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1175 135 315 Eukaryotic Initiation Factors Gene Family AT4G34110 23.037 4.49e-08 55.1