Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1173 ATGGACCAACAAGTTCTCGTGGATGAAAACTTTCCACTTTTCTCCAAGTCTCGTAAAGCCTCAAAAAACCACTTGCCAGCTGCCCCAACTGCTACAGCCACCAGTGTTGTTGCCACCAAAGACATTAACTTTGATAGCCAACACCTTGGAAAGTCAGATGACGCAGATCTTGATTTCACCAATCCTACTACTTTTGTGGAGCTAGGACTTGCCGAATGGGCTGTGAAGACTTGCAAGGAGCTCGCAATGCGCAAGCCTCGACAGGTCCAATTACATTGCATCCCGAAGATTCTAGATGGCTGCCATGTGCTTGGCATTGATGAGACAGGAAGTGGTAAGACTGCAGCATTTGCTCTACCAATTCTTCACCGACTGGGGGAGCATCCTTTTGGGGTTTTTGCTTTGGTTTTGACACCAACAAGGGAGTTGGCATATCAACTAGCAGAGCAATTTAGGGCATTGGGTTCATGCTTGCATGTGCGGATAGCTGTGGTGGTTGGAGGGATGGATATGTTGCAACAAGCCAAGGCTTTAACATCCAGACCGCATGTTGTGATTGCCACGCCAGGAAGGATCAAGGTTTTGCTTGAGGATAACCCTGATATTCCTCCAGTTTTTTCTAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATAGAGTTCTTGATGTCGGCTTTCAGGAGGATTTGAAATTAATCTTTCAGTGCTTACCAGAAAATCGGCAAAACCTATTTTTTTCTGCAACTACAACAAGTAATCTACAGAAGCTGCGTGAGCGTTACCAAGACAAGCTCTATGTCTATGAGGCCTATCAAGGCCTGAAAACAGTTGAGACGCTTAAGCAACAAATTATATTTGTCCCCAACAAAGTGAAGGAGGTTTATTTAATGCATTTATTGTCCAAAATCAAAGATATGGGCATTCGATCTGCCATTGTTTTTTTCTCTACATGCAGAGACTGTCATCGTCTAAGTTTAATGCTAGAAGTACTCGATCAAGAAGCTGCGGCTCTCTATTCATTCAAATCACAGACTCACAGACTTGAAGCACTTAATCAATTTAAATCGGGAAAGGTTTCTATACTGCTTGCAACTGATGTTGCCAGCCGAGGTTTGGACATTCCTACAGTTGATCTAGTAATAAATTATGATGTCCCAAGGTTTCCGAGGGATTATGTCCATCGTGTTGGTCGAACTGCAAGAGCAGGTAGAGGAGGACTGGCTGTGAGCATTGTTACCCAGAATGACATTCATCTCATTCATGAAGTAGAAGCTCTTCTTGAAAGGCAACTTGAGTTGGTTGAATACAAAGAGAATGAGGTGCTTTCTCTGATGAAAAAGGTTTTCAGTGCTAAAAATGTTGCCGAGATGAAAATGTTGGACGATGGCTTTGAGAAGAAAGCAAAAGAGCGGCAAAAGCAGAAACTGAAAATGTTAGAAGAAAAAGGATTGTTAAAGAAAAGGAGCAAAAAGAGGAAAAGAAATAAAGGCTTCAAGGAAGAAGGGAAGAAAAATAAAAGAGGAAGTGGAAACCTTACCAGATAA 1542 0.4241 MDQQVLVDENFPLFSKSRKASKNHLPAAPTATATSVVATKDINFDSQHLGKSDDADLDFTNPTTFVELGLAEWAVKTCKELAMRKPRQVQLHCIPKILDGCHVLGIDETGSGKTAAFALPILHRLGEHPFGVFALVLTPTRELAYQLAEQFRALGSCLHVRIAVVVGGMDMLQQAKALTSRPHVVIATPGRIKVLLEDNPDIPPVFSRTKFLVLDEADRVLDVGFQEDLKLIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYVYEAYQGLKTVETLKQQIIFVPNKVKEVYLMHLLSKIKDMGIRSAIVFFSTCRDCHRLSLMLEVLDQEAAALYSFKSQTHRLEALNQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLAVSIVTQNDIHLIHEVEALLERQLELVEYKENEVLSLMKKVFSAKNVAEMKMLDDGFEKKAKERQKQKLKMLEEKGLLKKRSKKRKRNKGFKEEGKKNKRGSGNLTR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1173 513 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 26 505 - -
Lele52g1173 513 CDD DEADc_DDX49 65 268 - -
Lele52g1173 513 MobiDBLite consensus disorder prediction 465 513 - -
Lele52g1173 513 Gene3D - 54 267 IPR027417 -
Lele52g1173 513 MobiDBLite consensus disorder prediction 465 484 - -
Lele52g1173 513 SMART ultradead3 82 282 IPR014001 -
Lele52g1173 513 MobiDBLite consensus disorder prediction 485 499 - -
Lele52g1173 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 419 IPR027417 -
Lele52g1173 513 SMART helicmild6 321 402 IPR001650 -
Lele52g1173 513 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 213 221 IPR000629 -
Lele52g1173 513 Gene3D - 274 507 IPR027417 -
Lele52g1173 513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 441 IPR001650 -
Lele52g1173 513 Pfam DEAD/DEAH box helicase 88 256 IPR011545 GO:0003676|GO:0005524
Lele52g1173 513 CDD SF2_C_DEAD 279 411 - -
Lele52g1173 513 Pfam Helicase conserved C-terminal domain 304 402 IPR001650 -
Lele52g1173 513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 267 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1173 Lele-ChrLele52 8221797 8225918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1173 64 419 Eukaryotic Initiation Factors Gene Family AT3G13920 32.507 7.49e-53 182