Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1156 ATGGTTATCCCGGGGCAGCCCCAGATGATAGGTGGAGGTGCTCAGAAACTAACAACTAATGATGCCTTACTCTATCTCAAAGCTGTCAAGGAAATGTTCCATGACAAGAGGGAAAAATATGATGACTTTCTGGAAGTAATGAAAAATTTCAAGGCACAAAGAATTGATACTGCTGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAAGGATCTAATTTTGGGATTCAACACCTTCTTGCCAAAAGGATACGAAATCACACTTCCACTGGAGGACGAACAACCTTCTCAAAAGAAGCCGGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATTAAGGCTCGGTTTCAGGGCGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACTGAGGTCTATCATGAGGTTGCCATTCTTTTCCAAGACCACCAAGACCTGCTTGTTGAGTTCACTCACTTTCTTCCAGACGCTTCAGCAGCAGCTTCTGCTCATTATGCTCAATCTACTCGGAACTCTTTGCTTCGGCACAGCAGCTCTGCAATGCCAGCAGTGCGTCACGTTGACAAGAGGGAAAGGACCATAACCTCACATGACCGTGACCATAGTGTTGATCATCCTGATCCAGATGACAGAGGTTTTATGAGGAGGCGTGGTGAGAAGGAAAAGGATTGTAGGGAAGATAGAGACAGGAAAGAGCAGGATCGGGATGATAGAGATTATGAGAATGATAATAGTCAGGACTACAATATGCAGAATTTCCCCCACAAACCAAAACATGGTGGCAGGGGTGATGATTTTGGCGCTGAACCTTTGCATCAAGGAGGTGATGCTGATGAACATTTTTGTCTGCATAGTATGTCATCGCCTTGTGATGATAAAAGTTCTGTGAAAAGTTGTTCAGGTATGTATAGTCAAGAGTTTGCTTTCTGTGATAAAGTGAAGGAGAAATTACGGAACCCTGATGATTATCAAGAATTTTTGAAGTGCCTGCATATCTATAGCAGGGAAATAATTACACGACAAGAATTGCAGTCATTGGTGGGTGATTTACTAGGAAAATATCCTGACCTTATGGAGGGTTTTAATGAATTTTTGGCAAGATGTGAGAAGAATGAATCCTTATGGAACGAAGGACATGCATCAAAATCAGTGAAGGCAGAAGACCGGGATAGAGATAGAGATCGTGGTCATGATGATGAGGTTAAAGAAAGGGATCGTGAATACCAAGAAAGGGATAGATCTGCTGCCATTGCCAACAAGGATGGTTCAGGTTCTAGGATGTCTATATTATCCTCCAAGGATAAGTATATGTACAAACCTATAAATGAGTTGGACCTATCTAACTAGCTTGGTGCTGACGTAGTGAATGATCATTGGGTGTCTGTGACATCTGGGAGTGAAGACTATTCTTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGATTTGAGCTTGATATGCTGTTAGAGTCTGTGAATACGACAACAAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATAATCAAAGCAGAAAGTCCAATCCGAATTGAGGAGCACTTAACAGCTTTAAATCTAAGGTGCATTGAACGTTTATATGGTGACCATGGGCTTGATGTAATGGAAGTGTTGAGAAAGAATGCGCCTTTAGCTTTGCCAGTTATACTGACTCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGATGATTTTAATAAAGTTTGGGCTGAAATATATGCCAAGAACTATCACAAATCCCTTGATCATCGGAGCTTCTACTTTAAGCAACAAGATATGAAAAGCTTGAGCACTAAAGCCTTGTTGGCAGAAGTTAAAGAAATTAGTGAGAAGAAACGTAAAGAAGACGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCCATTCTTCCAAATTTGGAATATGAGTTTTCTGATCCAGATATTCATGAAGATCTGTATCAGCTAATAAAATATTCATGTGGAGAAGTTTGCACGACTGATCAGTTAGATAAAGTTATGAAGATTTGGACAACATTTATAGATTCCATGCTTGGTGTTCCTTCTCGGCCCCAAGGAACATCTACGAATGGGACCCTCACTGAAGGCACCAAAGTTCAAAGATACCAAGAAGAATCAGTTGGACACTTAAAAGTTGAAAGAGAAGAAGGTGAATTATCTCCAAATGGAGATTTTGAGGAGGATAACTTTGCGGTTTACAGAGATGCTGGTTTGGAAGCCATGAGTAAAGGAAAGGATGGTGGTATGATTCAACAATACCAAAATAGACATGGAGAAGAAGAAGTTTGTGGTGAAGCCAGAGGAGAAAATGATGCTGATGCTGATGCTGATGATGAAGGTGAAGAAAGTCATCAAAGGTCATTAGAGGAAAGTGAAAATGCTTCTGAAAATGGGGATGTTTCTGGTAGTGAGTCTGCTGATGGCGAGTGTTCTCGAGAAGAGCATGAAGATGGTGAGCACAAGGCTGAGAGTGAAGGTGAAGCCGAAGGGATGGCCGATGCCAATGATGTTGATGGAGATGGATCTGTATTGCCATTTTCAGAACGCTTTCTACTAACTATAAAGCCTCTGGCAAAGTATGTTCCTGCAGCTTTGCATGAAAAAGAAGGGAATTCTCAGATTTTTTATGGAAACGACTCCTTTTATGTGCTTTTCAGACTTCACCAGACATTATATGAGAGGATACAATCAGCAAAGATCAACTCTTCATCTGCTGAAAGAAAGTGGAAGGCTTCAAATGAAACAAATTCTACTGATCAGTATGGCAGGTTCATGAATACCCTTTACAGTTTACTGGATGGTTCTTCTGACAATACAAAATTTGAGGATGACTGCAGGGCTATTATTGGAACTCAATCTTATGTCTTATTCACTTTAGACAAGCTGATATATAAACTCGTTAAACAGCTTCAAGCTGTTGCAACTGAAGAGATGGATAACAAACTTCTCCAACTTTATACATATGAGAAATCAAGAAAACCAGGAAGATTTGTGGACAGAGTTTATCATGAAAATGCCCGCGTTCTTCTTCACGATGAGAACATATATCGAATTGAATGTTCATCTAAACCATCCCGATTATCTATTCAACTGATGGACTATGGACATGATAAGCCTGAATTGACCGCCGTGTCCATGGACCCAAATTTTTCAGCCTATCTGCATAGTGACTTCCTCTCTGTTGTTCCTGACAAAAAGGAAAAGTCAGGGATTTTCCTGAAGAGGAATAAACGCAGATACGCATGTAGTGATGAATATTCAAGCCAGGCCTTGGAAGGAGTACAAGTTAGTAATGGTCTGGAGTGTAAAATAGCTTGCAGCTCATCCAAGGTTTCATATGTTTTAGATACCGAAGACTTCTTGTTTCGGATGAGAAGGAAAAGGAAAACTTTGCATCAGAACGGTTCATGCCATGAACAGGCAAAGTCCTCAAACATTTGTTCAAGCAGAGCACAGCGGTTTCGCAGATTGTTCCCGTTACATGATATTATCCATTTTGAGCTGAATAAGAGCATCAGATTTGCAGAGGTGAGGAAAGAGAAGGATACCGCATTGAAGCAGAGAGCTGAGAAAGCAAAAGCAGCCAAATAA 3690 0.4041 MVIPGQPQMIGGGAQKLTTNDALLYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPSQKKPVEFEEAINFVNKIKARFQGDDHVYKSFLDILNMYRKENKSITEVYHEVAILFQDHQDLLVEFTHFLPDASAAASAHYAQSTRNSLLRHSSSAMPAVRHVDKRERTITSHDRDHSVDHPDPDDRGFMRRRGEKEKDCREDRDRKEQDRDDRDYENDNSQDYNMQNFPHKPKHGGRGDDFGAEPLHQGGDADEHFCLHSMSSPCDDKSSVKSCSGMYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLARCEKNESLWNEGHASKSVKAEDRDRDRDRGHDDEVKERDREYQERDRSAAIANKDGSGSRMSILSSKDKYMYKPINELDLSNXLGADVVNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNTTTKRVEELLEKINNNIIKAESPIRIEEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRDDFNKVWAEIYAKNYHKSLDHRSFYFKQQDMKSLSTKALLAEVKEISEKKRKEDDVLLAIAAGNRRPILPNLEYEFSDPDIHEDLYQLIKYSCGEVCTTDQLDKVMKIWTTFIDSMLGVPSRPQGTSTNGTLTEGTKVQRYQEESVGHLKVEREEGELSPNGDFEEDNFAVYRDAGLEAMSKGKDGGMIQQYQNRHGEEEVCGEARGENDADADADDEGEESHQRSLEESENASENGDVSGSESADGECSREEHEDGEHKAESEGEAEGMADANDVDGDGSVLPFSERFLLTIKPLAKYVPAALHEKEGNSQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWKASNETNSTDQYGRFMNTLYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATEEMDNKLLQLYTYEKSRKPGRFVDRVYHENARVLLHDENIYRIECSSKPSRLSIQLMDYGHDKPELTAVSMDPNFSAYLHSDFLSVVPDKKEKSGIFLKRNKRRYACSDEYSSQALEGVQVSNGLECKIACSSSKVSYVLDTEDFLFRMRRKRKTLHQNGSCHEQAKSSNICSSRAQRFRRLFPLHDIIHFELNKSIRFAEVRKEKDTALKQRAEKAKAAK 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1156 1229 Pfam Paired amphipathic helix repeat 124 168 IPR003822 GO:0006355
Lele52g1156 1229 Pfam Paired amphipathic helix repeat 38 82 IPR003822 GO:0006355
Lele52g1156 1229 Pfam Paired amphipathic helix repeat 335 379 IPR003822 GO:0006355
Lele52g1156 1229 MobiDBLite consensus disorder prediction 399 431 - -
Lele52g1156 1229 FunFam Paired amphipathic helix SIN3-like protein 100 171 - -
Lele52g1156 1229 Pfam C-terminal domain of Sin3a protein 908 1154 IPR031693 -
Lele52g1156 1229 FunFam Paired amphipathic helix protein SIN3 311 384 - -
Lele52g1156 1229 Pfam Sin3 family co-repressor 464 531 IPR013194 -
Lele52g1156 1229 MobiDBLite consensus disorder prediction 399 440 - -
Lele52g1156 1229 Gene3D Paired amphipathic helix 21 83 IPR036600 GO:0006355
Lele52g1156 1229 MobiDBLite consensus disorder prediction 775 873 - -
Lele52g1156 1229 ProSiteProfiles PAH domain profile. 101 171 IPR003822 GO:0006355
Lele52g1156 1229 FunFam Paired amphipathic helix protein Sin3 21 83 - -
Lele52g1156 1229 SMART hdac_interact2seq4b 449 538 IPR013194 -
Lele52g1156 1229 ProSiteProfiles PAH domain profile. 306 382 IPR003822 GO:0006355
Lele52g1156 1229 MobiDBLite consensus disorder prediction 196 258 - -
Lele52g1156 1229 SUPERFAMILY PAH2 domain 98 170 IPR036600 GO:0006355
Lele52g1156 1229 SUPERFAMILY PAH2 domain 15 84 IPR036600 GO:0006355
Lele52g1156 1229 MobiDBLite consensus disorder prediction 812 826 - -
Lele52g1156 1229 SUPERFAMILY PAH2 domain 317 382 IPR036600 GO:0006355
Lele52g1156 1229 Gene3D Paired amphipathic helix 99 172 IPR036600 GO:0006355
Lele52g1156 1229 Gene3D Paired amphipathic helix 314 384 IPR036600 GO:0006355
Lele52g1156 1229 ProSiteProfiles PAH domain profile. 15 85 IPR003822 GO:0006355
Lele52g1156 1229 Coils Coil 507 531 - -
Lele52g1156 1229 MobiDBLite consensus disorder prediction 271 287 - -
Lele52g1156 1229 MobiDBLite consensus disorder prediction 187 287 - -
Lele52g1156 1229 MobiDBLite consensus disorder prediction 839 861 - -
Lele52g1156 1229 PANTHER SIN3B-RELATED 15 1052 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1156 Lele-ChrLele52 8060083 8069733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1156 2 120 WRKY Transcription Factor Family AT4G12020 48.760 1.90e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele52g1156 Sin3a_C 2.2e-58 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1156 52 8060083 8069733 Lele52g1156 52 8060083 8069733 ECH
Lele49g1098 49 7210387 7218949 Lele52g1156 52 8060083 8069733 hybridization
Lele50g1187 50 8155392 8165429 Lele52g1156 52 8060083 8069733 hybridization