Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1126 ATGGAAAAGCAAAATTTTCTCTGTGATGTTTCTTCAACATGGGAAGGTTCAGAGAATGAACAATCCATGGAGAAGAGGCTGAAGCTATTTGGGTTTGAGTTAAATTCATGTAGCAATAACAAAACCAGTTCAAATGAAGGAGATGAAAGTGTGAACTCTTCAAATTCAGTGCTGTCTTCTTCATCAGGATCTGGTGCACGTCAAGAGAAGATCATCGTCGTCACGGAATCATCTTCAACAGAAAACCCTAATTCTTTGTCAGATGAGCAGAGAAAGTTCCAGTGCCAATACTGCTTCAAGGAGTTTGCAAACTCACAGGCTTTAGGAGGCCATCAAAATGCTCATAAGAAAGAGAGAATGAAGAAGAAGAGGCTTCAGCTTCAAGCCAGGAAGGCCAGCCTCAATTTCTACCTTCAACAACGATCTTTTCAAACCAGTAATAATAATAATAATTATTATTATTATTATCATCAGTATAATAATACTAATTCTTCTTCTTCTTGTTGGTTCTATGATCCTTCTTCGTATAACAACTCAGCTGAGTTGTTCAATATTCATGAAGGATCACAGATTAGCTTCAGATCATCGTCATCAAATCATCATCATCCTCGTCCCCGTCGTCTTCAAGAGTCTTCTTCTTGTATGTTTGATTTCTCTCGTACAGATAATAATTCTTGTAGGCCTTTTGTGTTGGAGAATTCGACCCAGAAAACGAATCATAATTCTCATCAAAAAGCTTTGGATCTTCAACTAGGCTTAGCCTTGGAGTCCAATACAAGAATCTAA 786 0.3766 MEKQNFLCDVSSTWEGSENEQSMEKRLKLFGFELNSCSNNKTSSNEGDESVNSSNSVLSSSSGSGARQEKIIVVTESSSTENPNSLSDEQRKFQCQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASLNFYLQQRSFQTSNNNNNYYYYYHQYNNTNSSSSCWFYDPSSYNNSAELFNIHEGSQISFRSSSSNHHHPRPRRLQESSSCMFDFSRTDNNSCRPFVLENSTQKTNHNSHQKALDLQLGLALESNTRI 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1126 261 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Lele52g1126 261 PANTHER ZINC FINGER PROTEIN 5 14 256 IPR044299 GO:0010090
Lele52g1126 261 MobiDBLite consensus disorder prediction 193 212 - -
Lele52g1126 261 Gene3D Classic Zinc Finger 67 151 - -
Lele52g1126 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Lele52g1126 261 SUPERFAMILY beta-beta-alpha zinc fingers 90 120 IPR036236 -
Lele52g1126 261 MobiDBLite consensus disorder prediction 39 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1126 Lele-ChrLele52 7758451 7759236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1126 26 136 C2H2 Transcription Factor Family AT1G68360 42.857 1.07e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele52g1126 None None None