Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1118 ATGGCTCCCGCTGCTACTCAACTCCCCTGCGATTGTGACGGTGCTTGTATGATCTGCAAGAAGAAGCCTGCAGAGGAAGAAAAACTGGCTTGCAAAACCTGTGCTTCCCAATGGCATGTCAACTGTCTCTCTCACCACCGTCCGGAGACGATGGCGGAGACGCTTCAGTGGGAATGCCCCGATTGTTCGACTCCAACCTCCGATTTCCCTTCGGCGACCGTTGGCAAAGCCGTCTTTGATGGGGCCGGTGACTTGATGGCGAAGATCCGAGCGATTGAGGCCGATGGTTCTCTGACCGAACTTGAGAAAGCGAAGAAACGGCAACAAGTAATGAGTGGGAAGGCTGTGTCGGAGGAAGACGAATGTGGTGGTAAGAAGAAGGTAGAAGGTGACGGCAAGGGCGTGTTAGATATTCTTAGCGGGAGTCTGAACTGTTCCTTCTGTATGCAGTTGCCCGAGAGGCCGGTCACGACGCCATGTGGCCACAATTTCTGCCTCAAGTGCTTTCAGAAATGGATTGCACAAGGGAAACTAATATGTGCCAAGTGTCGTAGAGATATCCCTTCCAAAATGGCAAGTCAACCACGCATAAATTCTGCACTTGTTATTGCTATCCGTATGGCCAAAGTATCAAAAAACATAGGTGCAGGACAAACCTCTAGAGTTTATCAGTTCGTGCATAACCAAGAAAAACCCGACAAGGCTTATACTACTGAGCGGGCCCAGAGGAAAGGGAAATCAAATGCATGCAGTGGAAAGATCTTTGTTACTGTCCCTCAGGACCATTTTGGTCCGATACCTGCAGAGAACGATCCAGTGAGGAATCAAGGTGTGCTGGTTGGGGAATGTTGGGAAGATAGACTTGACTGCCGGCAATGGGGTGCTCACTTTCCTCATGTTAGTGGTATTGCTGGACAATCAAACCATGGTGCCCAATCAGTAGTTCTTTCTGGTGGTTATGTCGATGATGAGGATCATGGAGAGTATTTTCTTTATACTGGAAGTGGTGGTAGAGACTTAAGTGGAAACAAGCGAACAAGCAAACTACAATCATTTGATCAGAAGTTTGAAAAGTCCAATTTAGCTTTAAAAGTTAGCTGTTTAAAAGGTTATCCCGTTCGAGTTGTAAGATCTCACAAAGAGAAACGATCCTCATATGCCCCTGAGCAAGGATTACGTTATGATGGTGTTTATAGAATAGAAAAGTGTTGGCGGAAACAGGGATTGCAGGGCTTCAAAGTTTGTCGGTACTTATTTGTCAGATGTGACGATGAACCTGCGCCTTGGACAAGCGATGATCATGGAGATCGTCCCCGACCATTACCAGAAATTCCTGAGTTGGAAAAGGCTACAGAGTTGTTTATAAGGAAGGAGGATCCATCATGGGCTTTTGATGAGGAAGGATCTTGTTGGAAGTGGAAAAAACCACCACCTCCCAGTCGGAAGCATGTGAAAGGTATGGACCCCCAAGAGGTAAAATGGTCAAGGAGGGAAATAAGGAAAGCCCAAAATCTTTCAATCAGGGAAAGATTGCTGAAAGGATTCGGTTGCCTTATCTGTAAAGAGGTTATGGTTACTCCTGTGACGACACCCTGTGCTCATAATTTCTGTAAGTCGTGTTTGGAAGGCGCTTTTGCTGGCAAGTCTTTTGTGAGAGAAAGAAGCAGGGGTGGAAGATCTCTGCGGTCCCAAAAGAATGTCATGAAATGCCCGTCTTGTCCTACTGACATCTCTGATTTTCTCCAGAACATTCAGGTCAATACAGAGTTGTTGGGCTTAATCGAATCATTGAAAGCTGAGGCTGAAGAAGAAAATAGAGATGAAAGTGAGAATGAAGATGGAGCAGAGGAGGAAGACGGTGATGATGCTGAGGCTACAATGGAGGATGAAGATAAGGATGGCGATGATGTTGAGGCTACAATGGATGATGAGAATAAGGATACTTCGGTCGAGAAGCTTAATTATTCAGCTGAGGAATCTGATGTTAGCAAACCACAATCAAAAGAACTTGCAGTGACCAATCGTGGAGCCAAGGATAATTGCAAAAGAAAGAGAGCTGATGCTGTAAAAGTTTCTCCCAAAGCCAAAGGTGGTAAACGTAAAAGTAAAAAGAAGGTTGAGAATGATGATGATGGAAATGATTCACCAGCAAGTCCTCTTCATTTGCCATCAGACAATTAA 2181 0.4553 MAPAATQLPCDCDGACMICKKKPAEEEKLACKTCASQWHVNCLSHHRPETMAETLQWECPDCSTPTSDFPSATVGKAVFDGAGDLMAKIRAIEADGSLTELEKAKKRQQVMSGKAVSEEDECGGKKKVEGDGKGVLDILSGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIAQGKLICAKCRRDIPSKMASQPRINSALVIAIRMAKVSKNIGAGQTSRVYQFVHNQEKPDKAYTTERAQRKGKSNACSGKIFVTVPQDHFGPIPAENDPVRNQGVLVGECWEDRLDCRQWGAHFPHVSGIAGQSNHGAQSVVLSGGYVDDEDHGEYFLYTGSGGRDLSGNKRTSKLQSFDQKFEKSNLALKVSCLKGYPVRVVRSHKEKRSSYAPEQGLRYDGVYRIEKCWRKQGLQGFKVCRYLFVRCDDEPAPWTSDDHGDRPRPLPEIPELEKATELFIRKEDPSWAFDEEGSCWKWKKPPPPSRKHVKGMDPQEVKWSRREIRKAQNLSIRERLLKGFGCLICKEVMVTPVTTPCAHNFCKSCLEGAFAGKSFVRERSRGGRSLRSQKNVMKCPSCPTDISDFLQNIQVNTELLGLIESLKAEAEEENRDESENEDGAEEEDGDDAEATMEDEDKDGDDVEATMDDENKDTSVEKLNYSAEESDVSKPQSKELAVTNRGAKDNCKRKRADAVKVSPKAKGGKRKSKKKVENDDDGNDSPASPLHLPSDN 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1118 726 Gene3D - 244 440 IPR036987 -
Lele52g1118 726 ProSiteProfiles Zinc finger PHD-type profile. 13 65 IPR019787 -
Lele52g1118 726 CDD RING-HC 145 183 - -
Lele52g1118 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 624 IPR013083 -
Lele52g1118 726 Pfam RING-type zinc-finger 517 571 IPR027370 -
Lele52g1118 726 ProSitePatterns Zinc finger PHD-type signature. 10 62 IPR019786 -
Lele52g1118 726 SUPERFAMILY RING/U-box 511 599 - -
Lele52g1118 726 FunFam Predicted protein 101 210 - -
Lele52g1118 726 ProSitePatterns Zinc finger RING-type signature. 532 541 IPR017907 -
Lele52g1118 726 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 244 439 - -
Lele52g1118 726 Pfam SAD/SRA domain 275 424 IPR003105 -
Lele52g1118 726 SUPERFAMILY PUA domain-like 247 444 IPR015947 -
Lele52g1118 726 MobiDBLite consensus disorder prediction 643 665 - -
Lele52g1118 726 SUPERFAMILY RING/U-box 137 191 - -
Lele52g1118 726 ProSiteProfiles Zinc finger RING-type profile. 517 573 IPR001841 -
Lele52g1118 726 SUPERFAMILY FYVE/PHD zinc finger 8 66 IPR011011 -
Lele52g1118 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 78 IPR013083 -
Lele52g1118 726 MobiDBLite consensus disorder prediction 605 642 - -
Lele52g1118 726 ProSiteProfiles YDG domain profile. 273 421 IPR003105 -
Lele52g1118 726 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 622 IPR045134 -
Lele52g1118 726 SMART PHD_3 15 63 IPR001965 -
Lele52g1118 726 MobiDBLite consensus disorder prediction 600 726 - -
Lele52g1118 726 SMART ring_2 517 573 IPR001841 -
Lele52g1118 726 SMART ring_2 16 62 IPR001841 -
Lele52g1118 726 SMART ring_2 145 183 IPR001841 -
Lele52g1118 726 ProSiteProfiles Zinc finger RING-type profile. 145 184 IPR001841 -
Lele52g1118 726 SMART G9a_1 268 425 IPR003105 -
Lele52g1118 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 210 IPR013083 -
Lele52g1118 726 Coils Coil 587 619 - -
Lele52g1118 726 MobiDBLite consensus disorder prediction 675 694 - -
Lele52g1118 726 Pfam Zinc finger, C3HC4 type (RING finger) 143 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1118 Lele-ChrLele52 7599621 7603835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1118 6 603 C2H2 Transcription Factor Family AT5G39550 60.797 0.0 738