Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1104 ATGGCGAATTCCGCCGCTTCTCCTGCCATTTCAGAGGCCAACCCGCAGAAAATTGATTCGGGTGCTCCCAATTCTCATCAGAACCAACCCGATCCGGTTCATCCCTCCGCGCCCCCGGCAATACAACCTCCGCCATCATCCTCTGCGCCTGTCGGGGCAGTAAACCCTAACTCGAACCCATCAGGACTACCCACGCCACCTCCGCCACCTCCTTCAATTTCATATGCGGTGGCGGGGCCGGCACCTCAAGTCTCATGCGGAGCCGTTGCCCCTCCGGTCGTGCCATCCTTCAGGCCAGTAGCTCCGCAGACTGCCCAGTTTTCTCCCATACCTAACCCCATCAACTATCAAAATCCAGCTGTTCAGCCTCCCGGTGTAGGCTCTGCCTCCCCAATGACTCCTGGTGTGGCTAGTGGTGCCGGAGCGGTTCCAGTGCCAGGGCAGATGCAGCCAATGATGGTTCCGTATCAGATTCCTCCCGGTCAGCATGCTAATCCGGCCATGAGACCCTTTGCACCGATGCCCAATGGTTATACTTATACCGCCATTCCAGGAGCTCCGCAAGGAACCATGCCTCCACCGGGAATGCCTCGGTATCCACCTCCTTATGGAACTATGGTTCGTCCTTCATTTCCTCCACGCCCACCTGGAGCTGTTAATGTGCTTCCAGTATCACGCCCTCCTGTTGCTGGGATTCCTCCTGTTCACCCTGTCATTCCCCCTGTGGTTAGACCGGTGGTTGCTCCTAGTATTGCACCAGCTGATAAACCACAAACTACAGTTTATATTGGAAAGATTGCATCAACAGTGGAAAATGAATTTATGCTCTCTCTACTTCAGTTGTGTGGGCCTATCAAGAGTTGGAAACGTCCTCAAAATCCAACGAATGGAACTCCTTTAAGCTTTGGATTTTGGGAGTTTGAGTCTGCTGAAGGTGTTCTCTGTGCATTGCGTCTGCTTAATAAATTGAATATTGATGGGCAAGAATTAACGGTCAATCCTAATGACGCTACAAAAGAATATCTGGAGAAGTATGTTAAGAAGAAAAATGAGAACTTGCAAAAGGATACTCGGGCTGTCGGATCTGAGAAAGATGATGAGAGTGCCCAACCTTCGAATGCAAAAGAGGATGGAAAGCCTGATGACTCAAAGAAAGAGGACAGTAAGTCAGGGAACAAGGAAAATCATAATGTGACAAATCTCAGTATCATTACTGATGAAGACAGGGAAGCTGATAGAGAGGCCTTAGAGAAGATTACAAACATGATAGAGGAGAGACTAAAGACAAGACCTTTACCTCCACCTCCTGCACTGACAGCTCCAGATGGCCCTGCAAATTCAGCTTTGGAACAACCTTCAAAAGCAAGAGATGGAGACTCTGATGCAGATACAGTGAATAATGAAGCAGGTGATGATAAAAATGAAAAGGAGACAAATAGTGAGAACAAAGCAACCAGTGAACATGATAGGCCTGAGACCCCTGATAATAGAAGGCATGATAGGAGGAGCAGAGAAAGAGACCGAGATAGAGAACTAAAACGAGAAAAGGATAGGGAACTTGAAAGATATGAAAGAGAAGCAGAGCGAGAGCGCATTAGGAAAGAGAGGGAACAGAGGAGGAGGATTGAGGAGGCTGCGCGCCAGTATGAAGCATGTTTGAAGGATTGGGAGTATAGAGAAAGAGAGAAAGAGAAAGAACGTCAATATGAGAAGGAGAAGGAGAAAGAACGGGAGCGCAAGCGTAGAAAGGAGACTCTTTATGATGAAGAGGATGAGGATGAGGATTCAAGGAAGAGGTGGCGCAGAAGTTCATTAGATGAGAAACGAAAGAAAAGATTGCGTGAAAAGGAAGAGGACCTGGTCGACAGACAAAAGGAAGAGGAAGAAATTGCTGAGGCCAAAAGGAGTGCTGAGGAGGATCAACAACTGAAGCAGCAGAGGGATGCACTGAGGCTATTTTCTGAGCAGGTGAATGGTGGTGAAAAAAGTATGGCTACTGAGGATATGACTACTCAAGCCAAAAGTATTGTTACTGAACAAGACACTGTAGCTGACCATGGTTATGACGGCCATATAGGTGATGGTAATACAATAAATTGCACCAATGATGAATCAACCATAGCATCAGTTGCTGTTTCTGATACACGACAGAGTGGCAACGCCCCTGCTAAGAAGTTGGGTTTTGGTTTGTTTGGTTCTGGGAAAAGAACCACTGTTCCTTCTGTCTTCCATGAGGAGGAGGAAGATGATGCACACAAGGATAAAAAGATGAGGCCTCTGGTTCCAATTGATTACTCAACTGAAGAACTGCAGGCTGTTCAACCAACTGTTTCTGGGGCCCCGTCCCCAAATTTGGCTGCAGCCGCAGAATTTGCTAAGCGTTTATCCAATGCCAATATCAAGGAAGAGAAGGTAGATGGAGAGTGGGATAGAAGTAGGCGTTCTAGTGAGAAGTCCAACTACCGAGATAGGGACAGGAATGACTATGATGGCTCTCACAACAAAGATGAAAGGAGGGAAAAGATTTCTGATCGTGACAGGGGTCGAGATCGTGGGTTGGAAAAACAGAAGACATCAGATAACAAAAAGTTATTAGATGCGAAACAGTTGATTGATATGATACCAAAGACCAAAGATGAGCTCTTCTCATATGAGATAAACTGGGCAGTGTATGACAAGCACCAGCTGCATGAAAGAATGAGACCATGGATATCGAAGAAGATCACAGAGTTCTTGGGGGAAGAAGAAACGACATTGGTAGATTACATAGTTTCAAGCACGCGGGAACATGTGAAAGCATCCCAGATGCTGGAGCTGCTTCAATCCATTTTAGATGAAGAAGCCGAAATGTTCGTTCTCAAGATGTGGAGGATGCTTATTTTTGAAATAAAGAGGGTAGAGATAGGCCTTGCTACGAGGTCAAAATCTTGA 2931 0.4671 MANSAASPAISEANPQKIDSGAPNSHQNQPDPVHPSAPPAIQPPPSSSAPVGAVNPNSNPSGLPTPPPPPPSISYAVAGPAPQVSCGAVAPPVVPSFRPVAPQTAQFSPIPNPINYQNPAVQPPGVGSASPMTPGVASGAGAVPVPGQMQPMMVPYQIPPGQHANPAMRPFAPMPNGYTYTAIPGAPQGTMPPPGMPRYPPPYGTMVRPSFPPRPPGAVNVLPVSRPPVAGIPPVHPVIPPVVRPVVAPSIAPADKPQTTVYIGKIASTVENEFMLSLLQLCGPIKSWKRPQNPTNGTPLSFGFWEFESAEGVLCALRLLNKLNIDGQELTVNPNDATKEYLEKYVKKKNENLQKDTRAVGSEKDDESAQPSNAKEDGKPDDSKKEDSKSGNKENHNVTNLSIITDEDREADREALEKITNMIEERLKTRPLPPPPALTAPDGPANSALEQPSKARDGDSDADTVNNEAGDDKNEKETNSENKATSEHDRPETPDNRRHDRRSRERDRDRELKREKDRELERYEREAERERIRKEREQRRRIEEAARQYEACLKDWEYREREKEKERQYEKEKEKERERKRRKETLYDEEDEDEDSRKRWRRSSLDEKRKKRLREKEEDLVDRQKEEEEIAEAKRSAEEDQQLKQQRDALRLFSEQVNGGEKSMATEDMTTQAKSIVTEQDTVADHGYDGHIGDGNTINCTNDESTIASVAVSDTRQSGNAPAKKLGFGLFGSGKRTTVPSVFHEEEEDDAHKDKKMRPLVPIDYSTEELQAVQPTVSGAPSPNLAAAAEFAKRLSNANIKEEKVDGEWDRSRRSSEKSNYRDRDRNDYDGSHNKDERREKISDRDRGRDRGLEKQKTSDNKKLLDAKQLIDMIPKTKDELFSYEINWAVYDKHQLHERMRPWISKKITEFLGEEETTLVDYIVSSTREHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKRVEIGLATRSKS 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1104 976 SMART pwi_2 892 965 IPR002483 GO:0006397
Lele52g1104 976 MobiDBLite consensus disorder prediction 60 74 - -
Lele52g1104 976 MobiDBLite consensus disorder prediction 352 544 - -
Lele52g1104 976 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 23 976 - -
Lele52g1104 976 MobiDBLite consensus disorder prediction 1 74 - -
Lele52g1104 976 MobiDBLite consensus disorder prediction 352 393 - -
Lele52g1104 976 Coils Coil 558 593 - -
Lele52g1104 976 MobiDBLite consensus disorder prediction 560 645 - -
Lele52g1104 976 ProSiteProfiles PWI domain profile. 879 976 IPR002483 GO:0006397
Lele52g1104 976 SUPERFAMILY RNA-binding domain, RBD 194 334 IPR035979 GO:0003676
Lele52g1104 976 MobiDBLite consensus disorder prediction 737 767 - -
Lele52g1104 976 MobiDBLite consensus disorder prediction 803 859 - -
Lele52g1104 976 MobiDBLite consensus disorder prediction 454 544 - -
Lele52g1104 976 Coils Coil 607 643 - -
Lele52g1104 976 MobiDBLite consensus disorder prediction 403 425 - -
Lele52g1104 976 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 330 IPR000504 GO:0003723
Lele52g1104 976 Coils Coil 506 552 - -
Lele52g1104 976 Pfam PWI domain 899 962 IPR002483 GO:0006397
Lele52g1104 976 MobiDBLite consensus disorder prediction 32 50 - -
Lele52g1104 976 CDD RRM_RBM25 259 342 IPR034268 -
Lele52g1104 976 FunFam RNA Binding Motif protein homolog 855 971 - -
Lele52g1104 976 Gene3D - 252 367 IPR012677 -
Lele52g1104 976 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 337 IPR000504 GO:0003723
Lele52g1104 976 SUPERFAMILY PWI domain 897 962 IPR036483 GO:0006397
Lele52g1104 976 SMART rrm1_1 260 333 IPR000504 GO:0003723
Lele52g1104 976 MobiDBLite consensus disorder prediction 740 762 - -
Lele52g1104 976 MobiDBLite consensus disorder prediction 1 31 - -
Lele52g1104 976 Gene3D PWI domain 855 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1104 Lele-ChrLele52 7496288 7503979 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1104 52 7496288 7503979 Lele53g0954 53 19154958 19158988 CCT
Lele52g1104 52 7496288 7503979 Lele54g0934 54 15783285 15789403 CCT
Lele52g1104 52 7496288 7503979 Lele55g0519 55 3314740 3318743 CCT
Lele52g1104 52 7496288 7503979 Lele56g0505 56 3692020 3697252 CCT
Lele52g1104 52 7496288 7503979 Lele52g1104 52 7496288 7503979 ECH
Lele49g1048 49 6742210 6747706 Lele52g1104 52 7496288 7503979 hybridization
Lele50g1137 50 7555646 7563439 Lele52g1104 52 7496288 7503979 hybridization