Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1093 ATGTGTGTGTGTGTAGAGAAAGAGAGAGAGAGCAAACATGAAGCATCTTTTTCCCTTCTCCACCATCACAGAACAAAACCTCAAAAAGCTAACTTCAAAGAAAGCAAATTCGCAGTATTAGGAGACACAAAAATGCCAGGCTTTGAGGTTGCAGCAGCAGTGGAGGGATTCAGAACCTTGACTGAGACTAAAGCTTGGGACTACGTTGTAGTATGGAAGTATGGCGATGATCCCACAAGATTTATCGAGTGGATGGGTTGTTGTTGTGTTGGAGGATGTAATGGAAGCAAGAAGGAAGAGGAAGAGGAGGAAGAATACAGATTGAGTCCTAAATGTAGGGATAGTCACTTTCAGCATCCAGTGAGAACGAAGGCTTGTGAGGCTCTTGCTCTGCTTCCTTATACAATGCCACTTTATTCTGGTGTTCATGGAGATGTGGCAATATCAAAACAATCTCAATGGCTTACCCAGGATTCAACAGGAACCCAAGTTTTGATCCCTATCATTGGTGGTATTATAGAGCTCTTCTCAGCAGAGATTGTACCAAAAGATTCAAGGATCATAGAATTCATAACTGCACATTGTTGTTGTCTTTCTATGAAAAATGAAGCCATCTCTGAACATCCACCATTAGATTCATGTTATCCACAGAGCTTAATTTCTGGCATACATGAATCTGCAGTAGAGCAGTGTAGCTCTCATCCAAGCATTGAAGGATCCTCCAGTGGCTCAAATCCTTCAAATGAAACTTCAAAAGAGCATCAAAGAGGTTTGGATTTCCAGTGTGGCACCCTGGAAGAAGATAAACCAGAGTTGGTCAAGAGACCTAAAAGGGAAGGGTATACATCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAACAAGATCAAAGATGGGCTTTACGCGCTACGAGCTTTGGTCCCAAAGATAACCAAGATGGATAGGGCATCCATTGTTGGAGATGCCATTGATTATATAAAGGAACTGCAGGAACAAGAAAAAGGACTTAGAGATGAGATTAAAGCTTTGGAAGAAGAGGATTATGAAAAGAACAAACCACAGAGGAGGAGGCCAATATTGAAGGAACCAGGAGGAACCAGAAGTTTGCATCTTGATTCCACAAAAAGGACCCAGATGGAGGCAGAAAATAGAGTGCAGGTTGAAGTGAACCAGATTGGGAAGAGAGAGTTTCTTCTGAAGATACACTGTGAGCAGAAGAGAGGAGGGTTTGCAAGATTGATGGAGGCTATTCATTTGTTTGGACTGCAAGTAACTGATGCTAATGCGAACAAATTTGGTGGCAAAGTCATGAATATTCTGACTGTTAAGGCAAACAAGCTTGATATTCACCCAGATATATTGAGAGAGTATTTAACTAAGCAGCAAGCTGGTTCTCAAGAAAGAGGAGTTGATGCTGAGTTCAAGAAAGCTTAG 1434 0.4163 MCVCVEKERESKHEASFSLLHHHRTKPQKANFKESKFAVLGDTKMPGFEVAAAVEGFRTLTETKAWDYVVVWKYGDDPTRFIEWMGCCCVGGCNGSKKEEEEEEEYRLSPKCRDSHFQHPVRTKACEALALLPYTMPLYSGVHGDVAISKQSQWLTQDSTGTQVLIPIIGGIIELFSAEIVPKDSRIIEFITAHCCCLSMKNEAISEHPPLDSCYPQSLISGIHESAVEQCSSHPSIEGSSSGSNPSNETSKEHQRGLDFQCGTLEEDKPELVKRPKREGYTSKNLVTERNRRNKIKDGLYALRALVPKITKMDRASIVGDAIDYIKELQEQEKGLRDEIKALEEEDYEKNKPQRRRPILKEPGGTRSLHLDSTKRTQMEAENRVQVEVNQIGKREFLLKIHCEQKRGGFARLMEAIHLFGLQVTDANANKFGGKVMNILTVKANKLDIHPDILREYLTKQQAGSQERGVDAEFKKA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1093 477 MobiDBLite consensus disorder prediction 345 378 - -
Lele52g1093 477 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 58 192 IPR025610 -
Lele52g1093 477 Coils Coil 326 346 - -
Lele52g1093 477 MobiDBLite consensus disorder prediction 231 251 - -
Lele52g1093 477 Gene3D - 273 347 IPR036638 GO:0046983
Lele52g1093 477 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 187 454 - -
Lele52g1093 477 MobiDBLite consensus disorder prediction 231 261 - -
Lele52g1093 477 MobiDBLite consensus disorder prediction 345 363 - -
Lele52g1093 477 Pfam Helix-loop-helix DNA-binding domain 288 330 IPR011598 GO:0046983
Lele52g1093 477 SMART finulus 286 335 IPR011598 GO:0046983
Lele52g1093 477 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 345 IPR036638 GO:0046983
Lele52g1093 477 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1093 Lele-ChrLele52 7360377 7362597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1093 136 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 32.764 4.51e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele52g1093 bHLH-MYC_N 3e-14 CL0161