Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1082 ATGTTGGGGGGCAACAATGGAAATCCTGTTCTTCCTGTTTTCCTGAATGATGCTCACATGCAATATCAAACTAATGCGGCAAATCAACTGCAGTTGTTTGGAAACTTACCTGCTGGGTGTAGTGTTGATCCAGTTAATTACTTTGGAAATGAGCATATTAGTTCTATGGTTCGGCCGAGCAGACAAACCAGGGAAATAAATGACATGTCCAAGCAGCAAAGGCTTCAGATTTCCTTAAATCACAACTTCTGTCAAGATGAACCTGATCGATCCGCAAGTATTCCAAACCCAAATCCAAATCCAAATCCAAACCCTGTGTCAACGGGATTGAGGTTGTCTTATGACGACGATGAGCGTAACTCATCTGTCACTTCTGCAAGTGGAAGCATCACTGGCGCGCCTTCAATCATATTATCCCTTGGTGACAATATTAGAACTGAGCTTGATAGGCAGAAGCGAGAATTGGACCAGTATATTAAACTTCAGAAGGAACAGTTGTCAAAAGGATTGAGAGACATGAAACAAAAGCACATGGCATCTCTTCTTACTGCCATTGACAAAGGTGTAAGCAGGAAGCTAAGGGAAAAGGAAGTGGAGATAGAGAACATGAACTGTAAGAACCGAGAACTAGCGGAGAAAATAAAGCAGGTAGCCATGGAAGCACAAAACTGGCATTGCAGAGCGAAGTACAACGAGTCAGTTGTGAATGCTCTAAGGAACAATATCCAGCAGGCTATATCGCAGGGTGTTGAACAAGCAAAAGAAGGGTTTGGGGACAGTGAGGTTGATGATGCTGCTTCTGGCGTTGATCCGAACAAGTTGCTGAGCATCCATGGTGTGCCGATGGAATCTACCACCACTGGAAAGAAGCCGCAGCAAGGCTTGGAGGAGCACATGATTTGCAGGTTGTGCAAGGTGAAGGAGGTTTCAATGTTGTTAATGCCTTGTAGGCACCTGTGCTTGTGTATGGACTGTGATGCTTATGTCAATGTTTGCCCTGTATGCCAAATGATGAAATCTGCTAGTGTCCAAGTGTATTTTTCTTAA 1047 0.4394 MLGGNNGNPVLPVFLNDAHMQYQTNAANQLQLFGNLPAGCSVDPVNYFGNEHISSMVRPSRQTREINDMSKQQRLQISLNHNFCQDEPDRSASIPNPNPNPNPNPVSTGLRLSYDDDERNSSVTSASGSITGAPSIILSLGDNIRTELDRQKRELDQYIKLQKEQLSKGLRDMKQKHMASLLTAIDKGVSRKLREKEVEIENMNCKNRELAEKIKQVAMEAQNWHCRAKYNESVVNALRNNIQQAISQGVEQAKEGFGDSEVDDAASGVDPNKLLSIHGVPMESTTTGKKPQQGLEEHMICRLCKVKEVSMLLMPCRHLCLCMDCDAYVNVCPVCQMMKSASVQVYFS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1082 348 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 70 345 IPR017066 -
Lele52g1082 348 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 282 347 - -
Lele52g1082 348 PIRSF SBP1_RNase_bind 1 348 IPR017066 -
Lele52g1082 348 Coils Coil 193 220 - -
Lele52g1082 348 MobiDBLite consensus disorder prediction 84 128 - -
Lele52g1082 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 348 IPR013083 -
Lele52g1082 348 Pfam Zinc finger, C3HC4 type (RING finger) 299 337 - -
Lele52g1082 348 ProSiteProfiles Zinc finger RING-type profile. 301 336 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1082 Lele-ChrLele52 7261480 7263685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1082 283 346 C3H Transcription Factor Family AT1G73950 36.765 5.44e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1082 52 7261480 7263685 Lele52g1082 52 7261480 7263685 ECH
Lele49g1025 49 6574739 6576718 Lele52g1082 52 7261480 7263685 hybridization
Lele50g1119 50 7348805 7350998 Lele52g1082 52 7261480 7263685 hybridization