Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1079 ATGTCAACACTGAACCATCTTCTTGGCCTTCCAGAGAAAATATGTTACGTTCAATGTGGATTCTGTACCACCATTTTAATGGTGAGCGTCCCATGCAGCAGTTTGTCCATGGTGGTTACAGTCAGATGTGGACATTGCACAAGCCTTCTCTCTGTTAATATGATGAAAGCTTCTTTTGTCCCCTTCCACCTTTTAGCTTCCTTTACTCATCTACAGCTAAAACAGGGGAGTCCAGAAGAAGAAGCAAACAAGACTTTGGACAGCAGCCATAACCATAATGGAGGATCTATGATGATGACCTATTCTGATTGTGAGGAAGAAGATGCAATTCCCATGAGCATTGTGGCAAACAAACAGAAGAGACAGCGAACACCGTCGGCTTATAACCGCTTCATCAAAGAAGAGATCAGAAGGCTAAAGGCTGAAAACCCAGACATGGCTCACAAAGAAGCTTTTAGCACAGCTGCCAAAAATTGGGCGTGCAAAGGAGATGAAGAAAGCTTCAGCCTGACAGAGCAACTTGTGGATCTTCATGAAGATGCTGAGGCTAAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAAGGTTTCCGTGAAAGAAAGGTTCCAAGGAATTCAGTCTGGGCAAGGACACCATTTGAGTGA 642 0.4408 MSTLNHLLGLPEKICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASFTHLQLKQGSPEEEANKTLDSSHNHNGGSMMMTYSDCEEEDAIPMSIVANKQKRQRTPSAYNRFIKEEIRRLKAENPDMAHKEAFSTAAKNWACKGDEESFSLTEQLVDLHEDAEAKEEEEEEEEEEGFRERKVPRNSVWARTPFE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1079 213 PANTHER PROTEIN YABBY 6-RELATED 11 161 IPR006780 GO:0007275
Lele52g1079 213 Gene3D High mobility group box domain 114 205 IPR036910 -
Lele52g1079 213 Coils Coil 171 198 - -
Lele52g1079 213 MobiDBLite consensus disorder prediction 76 99 - -
Lele52g1079 213 MobiDBLite consensus disorder prediction 179 213 - -
Lele52g1079 213 SUPERFAMILY HMG-box 115 166 IPR036910 -
Lele52g1079 213 Pfam YABBY protein 11 160 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1079 Lele-ChrLele52 7245124 7246682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1079 2 213 C2C2-YABBY Transcription Factor Family AT1G23420 55.111 1.30e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele52g1079 YABBY 2.1e-58 CL0114