Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1069 ATGGATGAAATGTACGGCTTCTCGTCGTCTCCTGGGGATTACTCCGACAAAGCCATCATGTCGCCGGAGAATCTGATGTTCCCCGCCGATTACCAGAGCTTCCTCATGTCTTCCTCCGCCGCACCACCTGGCTTCCATGATCGGATTCCCGTTTTAGGATCCGACGAGTTGCTTTCCGCTGCCTCCGCTGTTACCGAAGTTGAAGCCTCCATCGCTGCTGCTCCTGAATTTCGGCCACAAGAGGAGGATGACTCTTCCTCCATCATCAAAGCCAGAATCGCATCTCATCCTCAATATCCTCGTCTCATTCAAGCTTATATCGATTGCCAGAAGCTTAGAATGTTAGAGTTGCTTAATGATCTTTTTGCTTTTTCCGAAAGAAAACCATTGGCTAATGGCATAAACAGTGCTCGCAGAATAGTCTTACTCGCGAACTTTCCTTACAACACATTAATGATCATTAGCCGCATGGGTACGTATGTGATTTCGCTGAGATGTGAGGCAGCTTTTTGGTTCTCAACTCAGTCGAGAACGTTCGAGGCCTTTGCCTTGTCTTCCCCCTCACACACCTGTGTTGTTGCTTTGCGCTTGCCATTTGTTCTCCTGTGGCCCCCCATGTGTATGTTTGCATCAAAACTTGTTATTCTCCCGGAGGCCAGATATCAAAATGATGGGAGTGTGTGGTCGGAAGAAGAAGATTTCAGTACGGAAGGTGGAGACGCTCAGGATGAAGATCGACAGCTTAAGGATAGTCTTTTACGTAAGTTTGGGAGTCGTATTGGCTCTTTGAAGTTGGAGTTCTCAAAAGAGAAGAAGAAGGGTAAGCTGCCAAAAGAAGCCAGGCAAACGCTGCTTGAGTGGTGGAGTGTTCACTACAAGTGGCCATACCCAACGGAATCTGATAAGGTTGCTCTGGCCAAGTCGACGGGTCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAGCGGCACTGGAAGCCATCTGAAAGCTTCAGCGTGCAATTTTCTGACATGGATAATCTTACTGGACTGTTTTTTACTGATGAATGA 1059 0.4693 MDEMYGFSSSPGDYSDKAIMSPENLMFPADYQSFLMSSSAAPPGFHDRIPVLGSDELLSAASAVTEVEASIAAAPEFRPQEEDDSSSIIKARIASHPQYPRLIQAYIDCQKLRMLELLNDLFAFSERKPLANGINSARRIVLLANFPYNTLMIISRMGTYVISLRCEAAFWFSTQSRTFEAFALSSPSHTCVVALRLPFVLLWPPMCMFASKLVILPEARYQNDGSVWSEEEDFSTEGGDAQDEDRQLKDSLLRKFGSRIGSLKLEFSKEKKKGKLPKEARQTLLEWWSVHYKWPYPTESDKVALAKSTGLDQKQINNWFINQRKRHWKPSESFSVQFSDMDNLTGLFFTDE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1069 352 ProSiteProfiles ELK domain profile. 247 267 IPR005539 GO:0003677
Lele52g1069 352 SMART ELK_2 247 268 IPR005539 GO:0003677
Lele52g1069 352 Gene3D - 272 333 - -
Lele52g1069 352 ProSiteProfiles 'Homeobox' domain profile. 267 330 IPR001356 GO:0003677
Lele52g1069 352 SMART HOX_1 269 334 IPR001356 GO:0003677
Lele52g1069 352 CDD homeodomain 279 331 IPR001356 GO:0003677
Lele52g1069 352 SUPERFAMILY Homeodomain-like 269 339 IPR009057 -
Lele52g1069 352 ProSitePatterns 'Homeobox' domain signature. 305 328 IPR017970 GO:0000981|GO:0006355
Lele52g1069 352 Pfam ELK domain 248 268 IPR005539 GO:0003677
Lele52g1069 352 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 226 331 - -
Lele52g1069 352 Pfam Homeobox KN domain 287 326 IPR008422 GO:0003677|GO:0006355
Lele52g1069 352 SMART KNOX1_2 87 127 IPR005540 GO:0003677|GO:0005634
Lele52g1069 352 Pfam KNOX1 domain 89 111 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1069 Lele-ChrLele52 7135177 7143592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1069 1 351 Homeobox Transcription Factor Family AT1G70510 42.500 3.38e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele52g1069 Homeobox_KN 3.1e-17 CL0123