Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1054 ATGGCTTCCCTTAACCTTCTTCTTTCTCTACTTCTCCCACTACTAGCAAATTCGATCATGATCAATACCCAATCATTTGACAAAGAACCCATGAATTGCTCTGCAACTATCCTCCAATGCAATGCCTCGTTATATCACGTCACCAACAAAAATGATCTCATCGCCAAAGAAGACATCGCATTGCTCTACTCCGTCCACGTGTCCCATTTGAAACCCATAAGACAACCCAACAATGAACATGATGATTACCTTGTTACCGTACCTTGTACTTGCCAAAATACCAGTGAACTTAGTGGCTACTTCTATCAAACGACCTACACAGTGACACCTAATGACACAGTGAAGAATATTTCAGATCTGGTTTATAGTGGACAAGAATGGATTCTGGGAAATCATAGCCTTCTGAGCATAAATGATACTTTAACGATAAATCTTCTCTGTGGGTGTTTGACGACTAAGTCTGAGATAGTTGTGACGTATACGGTGCAGGAGGGTGAAACGCCCTTCACAATGGCTAGTTTGCTCAATTCTACAGTGGATAACATGAAGCACTTGAATAGGTTTTTATTAAATTCAAACGACCTGTCGTCTATAGCTGCGGGGTGGGTTCTATTTATTCCCAGTGACTTAAATGGCATCCCAACCCTCCATGATCATAAAGGAAAAAGGAGCACCGAGATTAAATTAGTCGTTGGCATATTAGCAGTTTTGGCATTGCTTTTGATGCCCACAGCGCTTACACTCATTGCAAGGAACAGAAAACGCAAAGGAGCCTCTAAAAGATCAGTTTCCAATAGAAATCTTTCATCAGATCACCCTCATAAAAATATTGTAAAAGGAATATTAAGTCTTGAGGAGATTGAAGATGCAACCGATTACTTTAATGAAACCAGAAAAATTGGAGTTGGTGGATATGGAAGTGTGTATTTTGGAGTCATGGGCGAGAAGAAACCAGCTGATCGAGTTTTCTTTCAGGAGGTTGCAGTAAAGAAGATGATGAGGTCTAATAAATCTAAAGAGTTCTATGCAGAACTCAAGATCTTACGTAAGATCCATCATATCAACATTGTGGAGCTCTTGGGATATGCCTGTGGAGAAGACCACCTCTACTTGGTGTATGAATATGTTCCAAATGGATCTCTCAGTGATCATCTTCATGATCCTGTACTAAAAGGTTATCAGCCTCTTTCTTGGAATGCTAGAGTTCAGATTGCTCTAGATGCTGGAAAAGGTGTTGAATACATACATGATTACACGAAATCACGATGTGTTCACCGCGACGTAAAGACCAGCAATATCCTTCTTGATGAGAAGCACAGAGCAAAGGTTGCAGATTTTGGACTTGCAAAGCTGGTAGAACGAACAAATGATGAAGATACTAACATAGCAACAAGGCTTGTTGGAACACCTGGCTACCTTCCCCCAGAAGCTGTGAAGGAGGTTAAGACGACTCCAAAAACTGATGTGTTTGCATTTGGAGTGGTTCTGTCAGAGCTGGTAACAGGGAAACGGGCTTTGTTTCGTGACAGCCTGGAGGCCGACAAGATGAAATCGCTTATTACAGTTGTCAATAAAATATTCGAAGATAATGACCCTGAGGCTGCATTAGAAAAGGTCATAGATCGGAATCTTCAAGGTTGCTATCCTCTGGAGGATGTATTCAAGGTTGGCTTCAATATATATGCTTAA 1689 0.4097 MASLNLLLSLLLPLLANSIMINTQSFDKEPMNCSATILQCNASLYHVTNKNDLIAKEDIALLYSVHVSHLKPIRQPNNEHDDYLVTVPCTCQNTSELSGYFYQTTYTVTPNDTVKNISDLVYSGQEWILGNHSLLSINDTLTINLLCGCLTTKSEIVVTYTVQEGETPFTMASLLNSTVDNMKHLNRFLLNSNDLSSIAAGWVLFIPSDLNGIPTLHDHKGKRSTEIKLVVGILAVLALLLMPTALTLIARNRKRKGASKRSVSNRNLSSDHPHKNIVKGILSLEEIEDATDYFNETRKIGVGGYGSVYFGVMGEKKPADRVFFQEVAVKKMMRSNKSKEFYAELKILRKIHHINIVELLGYACGEDHLYLVYEYVPNGSLSDHLHDPVLKGYQPLSWNARVQIALDAGKGVEYIHDYTKSRCVHRDVKTSNILLDEKHRAKVADFGLAKLVERTNDEDTNIATRLVGTPGYLPPEAVKEVKTTPKTDVFAFGVVLSELVTGKRALFRDSLEADKMKSLITVVNKIFEDNDPEAALEKVIDRNLQGCYPLEDVFKVGFNIYA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1054 562 ProSiteProfiles LysM domain profile. 158 206 IPR018392 -
Lele52g1054 562 Gene3D LysM domain 158 207 IPR036779 -
Lele52g1054 562 SUPERFAMILY Protein kinase-like (PK-like) 278 513 IPR011009 -
Lele52g1054 562 FunFam PTI1-like tyrosine-protein kinase 3 376 559 - -
Lele52g1054 562 Gene3D Phosphorylase Kinase; domain 1 266 375 - -
Lele52g1054 562 Pfam Protein kinase domain 294 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1054 562 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 28 556 IPR044812 GO:0019199|GO:0045087
Lele52g1054 562 ProSiteProfiles Protein kinase domain profile. 294 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1054 562 SUPERFAMILY LysM domain 158 207 IPR036779 -
Lele52g1054 562 Gene3D Transferase(Phosphotransferase) domain 1 376 558 - -
Lele52g1054 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Lele52g1054 562 Pfam LysM domain 160 207 IPR018392 -
Lele52g1054 562 SMART serkin_6 294 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1054 562 ProSitePatterns Protein kinases ATP-binding region signature. 300 331 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1054 Lele-ChrLele52 7033035 7037658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1054 281 557 Receptor kinase-like Gene Family AT1G51940 48.057 4.98e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lele52g1054 Pkinase 7.2e-47 CL0016