Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1046 ATGGCTCTGCTTCTTGGCGCTTATCAACCTCACTCGCTATCTTCATTATCAGCCCGTCAAGAACTCACTGCTAAGCCTTTGATCAGAGTTTCTCTGCATCGCTTCCATTTCCCTGCTAATTCTATAATTCCACCTCTTCGCTTCACTTCTGCTTTCACTTCCCGGCAAGTTCTTCTAAGCCCTCCAAAATCATCGTCCATAAATGGGGTTTCGCTTCAGAATCATTTAGGCGCTTCGAGGGAAGACCATGGAGAAGATGAAGACTATTTTGACTTTCTGGAGAGGCTTAGAAGATGGTTTGGGGTCCTTCTCTCGATTTTTCCGGGTGGAGATTGGTGGGAATTCTCCGATGAAGTCAATGTTCAAGGTCTGGCCAAGCCGGTGACTGTTTGGCGCGCGCTTGCCAAAATGTGGGAACTTGTTGCTCAAGATAGGTGGATTATTTTCGCTGCGTTCTCGACTCTGATTCTTGCAGCGGTTTCGGAGATTTCAATACCACATTTCTTAACTGCATCCATCTTCTCCGCTCAGGGTGCGGAAATTACAGTCTTCCGTCGGAACGTGCGTCTCTTGGTTCTACTGTGTTTAACTTCCGGAATATGCAGTGGAATACGAGGTTACTGTTTTGGCGTTGCAAACATGATTTTGGTGAAGCGGATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCGTTTTATGACTCTGAAACAGTTGGCGATTTGACAAGCAGGCTTGGGGCAGATTGTCAACAAGTGTCACGTGTTATTGGAAATGATCTTAACTTGATATTACGCAATGTTCTTCAGGGAGGAGGTGCATTAATCTACCTGTTGGTTTTGTCTTGGCCACTTGGATTATGTACACTGGGTATATGCACAATATTATCAGTAGCTATGCTAATTTATGGAAGGTATCAGAAAAAGGCTGCAAGGTTGATCCAAGAAGTTACTGCCTCTGCAAATCAAGTAGCTCAGGAAACATTCTCTCTCATTAGGACTGTCCGTGTTCATGGAACTGAAGGAAAAGAACTCGGAAGATATAAATGGTGGCTGATGAGGTTAGCTGATATAAGTTTGCGACAAAGTGCTGCTTATGGATTTTGGAATTTAAGTTTCAACACACTTTATCATTCAACTCAGGTTATTGCCGTGCTGTTTGGAGGAATGTCCATTCTAGCAGGTCATATTACTGCAGAGAAACTCACCAAGTTCATACTATACAGTGAATGGCTCATTTATTCAACCTGGTGGGTTGGAGACAATATATCCTCTTTGATGCAATCAGTTGGAGCCAGTGAAAAAGTATTTCGATTGATGGATCTCTTACCAAGCAGCCAATTCATAGCAAGGGGGGTAAAGCCACAGAGATTAACGGGGCTTATTGAGTTTATGGATATTTCTTTTCGCTACCCCTCAAGGCCAACGGTACCTGTTGTGCAACATGTAAGCTTTTCTGTTGATCCTGGTGAGGTGGTTGCAATTGTTGGTCTTAGTGGTAGTGGAAAAAGCACACTGGTAAACCTTTTGCTTCGGCTATATGAGCCAACAAATGGTCAGATTTTGATTGATGGCTACCCTCTTAAAGAGTTGGATATCATGTGGTGGAGAGAAAGAATTGGTTACGTGGGACAGGAGCCAAAGCTCTTTCGCATGGATATTAGTTCAAACATCAGATATGGATGCCCCCATGGTACGAAGCAGGAGGATGTTGAATATGCTGCCAAGCAGGCCTATGCTCATGAATTCATCTCAGCACTTCCTAATGGTTATGAAACACTTGTTGATGATGATCTATTAAGCGGGGGACAAAGGCAGCGAATCGCCATCGCAAGGGCCATTCTTAGGGACCCAACTATTTTGGTCCTTGATGAAGCCACCAGCGCACTGGATGCTGAGAGCGAATATAATGTCCAGGGTGTATTTCGATCTGTCAGAAGCGACTCCACGACTAGAAGCGTCATAGTCATTGCGCACAGGCTTTCTACCATAAAAGCGGCTGACAGGATCGTGGTAATGGATGGTGGTCGAGTTGTTGAGATTGGGAGTCACAGGGAACTTCTTCTGAAAGATGGTTTATATGCACGATTGACTAGAAAACAGGCCGACGCGATGGGGAAGAACCAAGTTTTACCAAAGAACAAAGAATGTCTTGCTGCAGCTGATTTGGATGGAACTTCAAGGAAGCTTCAGAAGGGTCACACATATCAAGTTCTTATAAAGCCTATGAAAAGCATAAGAAAGGCAAGGTTGAAGACTCTAAATACTGCATAG 2280 0.4395 MALLLGAYQPHSLSSLSARQELTAKPLIRVSLHRFHFPANSIIPPLRFTSAFTSRQVLLSPPKSSSINGVSLQNHLGASREDHGEDEDYFDFLERLRRWFGVLLSIFPGGDWWEFSDEVNVQGLAKPVTVWRALAKMWELVAQDRWIIFAAFSTLILAAVSEISIPHFLTASIFSAQGAEITVFRRNVRLLVLLCLTSGICSGIRGYCFGVANMILVKRMRETLYSSLLLQDISFYDSETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGALIYLLVLSWPLGLCTLGICTILSVAMLIYGRYQKKAARLIQEVTASANQVAQETFSLIRTVRVHGTEGKELGRYKWWLMRLADISLRQSAAYGFWNLSFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISSLMQSVGASEKVFRLMDLLPSSQFIARGVKPQRLTGLIEFMDISFRYPSRPTVPVVQHVSFSVDPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDGYPLKELDIMWWRERIGYVGQEPKLFRMDISSNIRYGCPHGTKQEDVEYAAKQAYAHEFISALPNGYETLVDDDLLSGGQRQRIAIARAILRDPTILVLDEATSALDAESEYNVQGVFRSVRSDSTTRSVIVIAHRLSTIKAADRIVVMDGGRVVEIGSHRELLLKDGLYARLTRKQADAMGKNQVLPKNKECLAAADLDGTSRKLQKGHTYQVLIKPMKSIRKARLKTLNTA 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1046 759 FunFam Multidrug ABC transporter ATP-binding protein 456 707 - -
Lele52g1046 759 SUPERFAMILY ABC transporter transmembrane region 136 446 IPR036640 GO:0005524|GO:0016020
Lele52g1046 759 Gene3D ABC transporter type 1, transmembrane domain 300 461 IPR036640 GO:0005524|GO:0016020
Lele52g1046 759 Pfam ABC transporter 483 630 IPR003439 GO:0005524
Lele52g1046 759 Pfam ABC transporter transmembrane region 154 415 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele52g1046 759 SMART AAA_5 491 679 IPR003593 -
Lele52g1046 759 CDD ABC_6TM_TAP 151 438 - -
Lele52g1046 759 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 464 702 IPR003439 GO:0005524
Lele52g1046 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 703 IPR027417 -
Lele52g1046 759 PANTHER ABC TRANSPORTER B FAMILY 142 701 - -
Lele52g1046 759 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 149 430 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele52g1046 759 FunFam ABC transporter B family member 26, chloroplastic 130 449 - -
Lele52g1046 759 Gene3D ABC transporter type 1, transmembrane domain 117 299 IPR036640 GO:0005524|GO:0016020
Lele52g1046 759 Gene3D - 462 712 IPR027417 -
Lele52g1046 759 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 698 712 IPR023076 GO:0004420
Lele52g1046 759 ProSitePatterns ABC transporters family signature. 602 616 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1046 Lele-ChrLele52 6949201 6956464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1046 219 706 Calmodulin-binding Proteins AT2G36910 34.809 2.75e-73 258