Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1040 ATGGAAGAAGCTTTCAGGCGTCTCAACGGCCTCGATTCCAACGACTCCTTCTCCAATCACCACCACCACCACAAGAAGTGCGCCTCCGCGGCCAACAAGAGGGCTTCCAGAGATAACGGCCCCGCCGGTGCTATGAGGTACCGTGGAGTTAGGCGTAGGCCCTGGGGCCGTTACGCCGCCGAGATAAGGGACCCTCTGTCCAAGGAGCGGCGTTGGCTCGGTACCTTTGACACGGCGGAAGAAGCCGCTTGTGCTTACGACTGCGCGGCCCGAGCAATGCGTGGCCTTAAAGCTCGTACCAACTTCGTGTACCCAACTTCCGCTCCTCCTTACTCTGTTCCTTACAATCTCTTACCTCCTTCCTTCAACTTCCCCAAACAATCTCAGACTTCGTCCGTTAATATTAACAAGAACCTCCATAACCACCACCATGAGGGAGCTTCTAGGTGGTCCAACCCTCGTACCTGTACTTCAACCCACCGAAACTCTACCTCGAACGTGATTATGTACCCTGATGTTCTCAACCCTTCTGTCGTTCCTTCTTCTTCTTCATCGTCCTCTTCGTCGACCTGTCCCACGTGTACTTGTCTCCAAGGTTGCTGTCCGATGAACTCTTCTGGTGGCACTAATACTGTTACTAGTAGTAGCAAAAGTGGGTCTGCTTCCGTCTCCATGACCTCAAGCCATAATCATAATGTAATGATAACTCAGAGCGATTGTGAAGCTGATGAAGAATTTGCGTTCTTTCCAAGAGAAGCTTCAGACTCGGGGTTGTTGGAGGAGATAGTTCATAAATTTATGTTAACTTCGAAGAAGCCCAAGAAATTTGAGATGCCTCTCCCAGAATTTCCCCCTCCGAGTCAGACTCAGACTCAGTCTCAGTCAGTCCTTGATCCTACGTTCGTTTCTGCTTCTCAGTGCTATTACGAAACCAAGAAAGAGGGTTTTGGTGTGTATTTGGACGATGACCAAGGTTTTGTTCCCATGCAGCAGCAGCAACAGCAGTTTGAGGGTTTTGAGGAGCAGGCTATGCATTTCGGCAACTACGGTTATCAGTGGATGAATAATAACCATGCAGATTTCTCAATCACGCAAGATCTTGTTCGTTATCAAGAGATTCTTAATGCCTTTGCAGCCAGCGTCCAAAATGCTTAA 1155 0.4926 MEEAFRRLNGLDSNDSFSNHHHHHKKCASAANKRASRDNGPAGAMRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSAPPYSVPYNLLPPSFNFPKQSQTSSVNINKNLHNHHHEGASRWSNPRTCTSTHRNSTSNVIMYPDVLNPSVVPSSSSSSSSSTCPTCTCLQGCCPMNSSGGTNTVTSSSKSGSASVSMTSSHNHNVMITQSDCEADEEFAFFPREASDSGLLEEIVHKFMLTSKKPKKFEMPLPEFPPPSQTQTQSQSVLDPTFVSASQCYYETKKEGFGVYLDDDQGFVPMQQQQQQFEGFEEQAMHFGNYGYQWMNNNHADFSITQDLVRYQEILNAFAASVQNA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1040 384 CDD AP2 46 102 IPR001471 GO:0003700|GO:0006355
Lele52g1040 384 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Lele52g1040 384 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Lele52g1040 384 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
Lele52g1040 384 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Lele52g1040 384 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Lele52g1040 384 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 30 230 - -
Lele52g1040 384 MobiDBLite consensus disorder prediction 12 45 - -
Lele52g1040 384 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Lele52g1040 384 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Lele52g1040 384 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1040 Lele-ChrLele52 6899337 6900491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1040 1 105 AP2-EREBP Transcription Factor Family AT1G24590 60.169 1.34e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele52g1040 AP2 1.1e-11 CL0081