Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1032 ATGGATTTTGAGGAGCAAGAGGAGGAGCTCGGGATGGGGCCCGCCGGGAGTTACGACTCCATGGGGAACCCGACCCGAGTGAAAATGGCGAGTAGCGGAGAAGTCATGGTGGTTCAGGCTGCGAGAAATAGTAACAATAAGGCGAGGTATAGGGAGTGCTTAAAGAACCACGCCGTGAGCATCGGAGGCCACGCGCTCGACGGCTGCGGCGAGTTTCTCCCAGCCGGAGCTGAAGGCACCATGGACGCACTCAAATGTGCCGCCTGTAACTGCCACCGGAATTTCCACCGCAAAGAAACGGACACGATTGGTATCGGAGTCGGGGACCCGTATTTGTTAACCAACCACCCGCACCTCCACCAGCACCAACCGCCTCAGTTCCCGCCGTATTACCGAACAGCGCCGGCGGGGTATCTGCACGTGGGAGGACAACACAGAGGGCCGGCAACGCCGGCGCTGCCGTCGACGTCTGGAGCAGGGTGTGGAATCCAGAGCATAAGGGACGATCAAGAGGACGTTTCGAATCCCAGTGCACTCGGAGGGATGGACGGGTCGAAGAAAAGGTTCAGGACGAAGTTCACGCAGGAACAAAAGGACAAAATGCTGGCTTTAGCTGAGAAACTGGGTTGGAGGATTCAGAAACACGACGAGGCGGTGGTCCAAGAGTTCTGTAACGAGACAGGTGTGAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTCGGTAAGAAGCCCTAG 750 0.568 MDFEEQEEELGMGPAGSYDSMGNPTRVKMASSGEVMVVQAARNSNNKARYRECLKNHAVSIGGHALDGCGEFLPAGAEGTMDALKCAACNCHRNFHRKETDTIGIGVGDPYLLTNHPHLHQHQPPQFPPYYRTAPAGYLHVGGQHRGPATPALPSTSGAGCGIQSIRDDQEDVSNPSALGGMDGSKKRFRTKFTQEQKDKMLALAEKLGWRIQKHDEAVVQEFCNETGVKRHVLKVWMHNNKHTLGKKP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1032 249 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Lele52g1032 249 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 245 - -
Lele52g1032 249 MobiDBLite consensus disorder prediction 157 172 - -
Lele52g1032 249 MobiDBLite consensus disorder prediction 147 185 - -
Lele52g1032 249 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 186 242 IPR006455 -
Lele52g1032 249 FunFam Zinc-finger homeodomain protein 2 173 247 - -
Lele52g1032 249 Pfam ZF-HD protein dimerisation region 48 100 IPR006456 -
Lele52g1032 249 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Lele52g1032 249 Gene3D - 172 247 - -
Lele52g1032 249 MobiDBLite consensus disorder prediction 1 26 - -
Lele52g1032 249 SUPERFAMILY Homeodomain-like 178 247 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1032 Lele-ChrLele52 6809311 6810060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1032 1 245 ZF-HD Transcription Factor Family AT4G24660 50.000 1.32e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele52g1032 ZF-HD_dimer 1.1e-29 No_clan