Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1017 ATGCGCCGCGGCATCTCGAAGGGGATGGCAACACAAAAGCATACTGGAATCCTCAATTTTGATTGCTTCAAAGTTCGAAGCTCTGTTTCTGGTGATCCATGTGATCTTCCATCTCATCTCCAAGTCAAACCTTTCTATGCTAATCCAACAGATAGTCACGAAAAATTAGTTTTACTGCAGGTTACGAAGTTGGAAAATCATCAGATCATCTCTTTCATCTGTATTGAATTGGAGGGTACTGGGAAGAAGCATCTCCTGAAACAAGAATGCTGGAGCCTTCGACTCCCTTGCAAAATAAACAGGCCAATACATGTCTTATCTTGCAAATCCCAGTCTTTCAAGTGTCATTCTTTTCTAGGAACTGGCCGACCAAGTGAACTACCTGTTGTTAAGGGGGCTGCCACAGCACTGGCAAGGTCCTTTAATGTTTTACAAGGTAATCCTGTCATAGCAAAGTTAATTCCAGCACTTGGTGTAATCACATTTGCTATATGGGGTGTCAGCCCATTACTATTTCTAACAAGAAAACTGTTCCTTCAGGTGTGGTTATTATTGCAGATTTTTCTGCAGAAGGATAGCAATTGGAAGAAAAGCAGCACAAATTATATAGGAACTTCTTATCTTCGGCCAATATTGTTATGGATTGGAGCTATACTTGTGTGCAGAGCTTTGGAGTCAATAGTTCTACCTACAGAAACTAGCCAGATTGTTAAGGGAAGGCTTTTGAATTTTGTAAGATCGTTGTCAACTGTCCTTTCATTGGCGTATTGTTTATCAAGTGTGATTCAACAAGCTCAGAGATTCTTTGTTCAGAGTGCTGATGCCAATGAGGCAAGAAATATGGGATTCCAATTTGCGGGCAATGCTGTGTACTCTGCTGTATGGATTGCCGCCTTTTCATTGTTCATGGAATTGCTGGGTTTCTCTACCCAGAAATGGCTTACTGCAGGAGGTCTTGGGACAGTTTTGCTTACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGCTTGATGATTCACGCAACCAGACCTTTTGTGATGAAAGAATGGATTCAAACAAGAATTGAAGGATATGAAGTTTCTGGTCATGTAGAGGCTTTTCAACTCCATGAAGTATATTATGTTTGTCCTGAAACAAATGGTTTATTGCCTCTACAGAATATTGTTGCTGACATGCGGAAAGTCTTAGCCAAAAATCCTCAAGTAGAGCAGCAGCGGCTGCACAGGAGAGTGTTTCTGGAAGATATAAATCATGAAAATCAAGCTCTTATGATAATTATTGAGACTCAGTTTTTTATCAATGTAACAATAAAATCCTGTGGCCATTTGTTTGCCTTGAAACTTGAAAGTGCTATTTTGAGCTGTGCTTTGACCATACTACTTCTGGATCTCATACTAGTGTCTTGTTTTGTCAAGACCTCACGTCATGAAGAGTATTTTCGTGTCAAGGAAATTATACTATTAGATCTTCTTAGAGTCATTGGTCATCATGGAGCTCGACTTGCAACACCATATCGTACTCTGCAGAGGAGATATAGTGATGACGACTTAGAGAACATACCCTATGCAGATTCTTTTGTTGGTGGGGCTAGACCAGCACGTAAACGTCCATTATTATTGATTGAGCCACCTTACAAAATCAACTCTGATGATAAAACAAGAAGCAACAGAACACAAACCAAACAATCTGCAAAAACTGATGCCAAGGGTGGATCATCAGTGGTTCCAGATTCCAATGTTAAAGAAACTCCTTCAAACTCCAAGTCAGTCCCTGATACTGAGAAGGAAATGGGTTTGATTCCTAAACAACCTGTGTTTTGCCTAAAATGGCCATGGGATGTTAATCAAAGTAACCAAACTTCTAACACTTGCAACTTTGACGGTCCTTGGCTATTCAAATCAATCCAAAATCTTGGATCAATTGCTTTCAACTTTGCCAATTCACTTTCAAAATCTTCAAGTTCTCGGATGATTTCTCTCAATCCCTTGCAATTGGATGAGAAAACCAAGGGGAGGCAGAAAATGACTCCAACTAAGCAAGGGAAGGCAGAGCAGAGAGCTTTTGCCTCTGCTCTAGCCAGTGGGAAGGAGGCTACAGTGCTTGAGTTCTACTCGCCCAAATGTAGGCTTTGCAATTCTTTGCATAAATTTGTTTCTGAGGTAGAGACAAGGAATTCTGACTGGCTCAACATTGTTATGGCTGATGCTGAGAATGAGAAATGGCTACCAGAGCTCCTTAATTATGATGTAAGGTATGTTCCTTGCTTTGTGCTTGTTGACAAAAAAGGAAGGGCCCTTGCAAAAACAGGTGTTCCACACAGTCGTTTACATGTGATATCGGGTCTGTCCCATCTTCTCAAAATGAAGCGTCCTCTTCAACATAATCATGGATCAAGGCAGACTGATGCATGA 2418 0.4074 MRRGISKGMATQKHTGILNFDCFKVRSSVSGDPCDLPSHLQVKPFYANPTDSHEKLVLLQVTKLENHQIISFICIELEGTGKKHLLKQECWSLRLPCKINRPIHVLSCKSQSFKCHSFLGTGRPSELPVVKGAATALARSFNVLQGNPVIAKLIPALGVITFAIWGVSPLLFLTRKLFLQVWLLLQIFLQKDSNWKKSSTNYIGTSYLRPILLWIGAILVCRALESIVLPTETSQIVKGRLLNFVRSLSTVLSLAYCLSSVIQQAQRFFVQSADANEARNMGFQFAGNAVYSAVWIAAFSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSLMIHATRPFVMKEWIQTRIEGYEVSGHVEAFQLHEVYYVCPETNGLLPLQNIVADMRKVLAKNPQVEQQRLHRRVFLEDINHENQALMIIIETQFFINVTIKSCGHLFALKLESAILSCALTILLLDLILVSCFVKTSRHEEYFRVKEIILLDLLRVIGHHGARLATPYRTLQRRYSDDDLENIPYADSFVGGARPARKRPLLLIEPPYKINSDDKTRSNRTQTKQSAKTDAKGGSSVVPDSNVKETPSNSKSVPDTEKEMGLIPKQPVFCLKWPWDVNQSNQTSNTCNFDGPWLFKSIQNLGSIAFNFANSLSKSSSSRMISLNPLQLDEKTKGRQKMTPTKQGKAEQRAFASALASGKEATVLEFYSPKCRLCNSLHKFVSEVETRNSDWLNIVMADAENEKWLPELLNYDVRYVPCFVLVDKKGRALAKTGVPHSRLHVISGLSHLLKMKRPLQHNHGSRQTDA 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1017 805 Pfam Mechanosensitive ion channel 289 372 IPR006685 GO:0016020|GO:0055085
Lele52g1017 805 MobiDBLite consensus disorder prediction 548 598 - -
Lele52g1017 805 SUPERFAMILY Thioredoxin-like 687 770 IPR036249 -
Lele52g1017 805 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 387 430 IPR045042 -
Lele52g1017 805 Gene3D Glutaredoxin 675 790 - -
Lele52g1017 805 Pfam Thioredoxin 686 767 IPR013766 -
Lele52g1017 805 MobiDBLite consensus disorder prediction 561 594 - -
Lele52g1017 805 Gene3D - 247 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1017 Lele-ChrLele52 6709758 6718709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1017 99 594 Mechanosensitive Ion Channel Family AT5G10490 48.799 3.41e-165 492