Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1011 ATGAGGGATTCATTAGTGAGGCCGAAGATGAGGAAATTGGGAGCTAGCGTTTCAAACAAATATATTGAGTTCAGCCAAACAGGAGAATTGGGAAAGCTTGAAACAATCAAATTTATGGATTCCACCACCCAAACAGGGAAGATATTTGTTGCTGTTAGTAATGATCTTCAAGATGGAATCAAGACCTTGAATTGGGCTCTCAATAAATGGAAATCTTATCCTATTTCCGTTGTTATTCTCTATGTAAGTCACAATACTTCCAAGGATCATGTGAATACCCCGTTTGGGAAACTCCCAGCAAGATCTGTGAATGATGAGATGCTTCCAGCTCTCAGGAAACAAGAGCAAGACAAAATCGACAAACTTCTCTCCAAGTACATAGCTTTCTGTGGAAAGGTGCCAGATGAAATACTTGAAGTCGATAAATGTGATGAATCTATCCAAAAACGCATCTTAGACATGATTATTGGTCTAGAAATAACCAAACTCGTCATTGGATTTTCAGTGATGAAGCCCTCCTGGAAATCACGAGGTGCCATAAGCGGATTGTTCTATATTCATCAGCATAAGCCAGAATTATGCGAACTGTTCATCATATGTGGAGGGAAACAAGTATTCATGAGAGGACATAACGATGAAAATATCACGGAGGACGATAATGGGGTTGTGGTTGCCAGAATCAGAGACAAGATAACATTCAAAGATTGGTTAGAGAAAATGTTGCCTGACAGAAACAACAATATGGATTCCCCAGAGTATTCAAGAAGCCCTCTTGGATCAGCAACTTGTTCTTCAGCATCCCTAGGTTCACAGAACCAGTGGGAAATCTATCTCCAAGAGATTGAAACATATTTCCAGGATTTGTTATGTTCTAACACGAATAATGATGAACAAATTAGACTTGAGCATCAAGATAGTGACGTCTCGGGGATTAGTGGAATGGAGCCAGATGATGATGATGATGTCAGGGAACAGAACAATTCTATGAAACCAAAAGAAAGAATTGAGATGCTGAAAGGAAAATTGGAAGAGGCGCGTAGGATGGTCCAACTGAAGAGGAAAGAAGCTAAGGATCAAAGTGATAGACATGCAAAAGCTGAATGGGCTATTTGTTTATGCAACACTCGGGCTCAAGAACTTGAAGGCAAAATCAAGGAAGAGATGAACATGAAGGAGGAGTTAGCAAAAGAATTAGAAGCAGAAACAGAAACCATATATGAAACCAGACGTGACATTGAAGAGAGCAGAAAAAGGTTAAGCTCACTGTTGGAGCTTCAAATGGAGCTCTCAAACAAGCTTCAGATCTCCACACAGGCAAGATCACAAGCCGAAATCCAATTGGAGAATGCGGCGAATACCAGATCGGAGATGGTGGCAGACATCGACCAGCTTCGGAGACAAAGAGACGTGCTTTACAGAAGGATTGAGTTTTGCAAAGATAAGGACGCCATAGGAATGGCTGCCAGGCTGAGCGAACCGGTTTTCAGTTTCAGAGAGTACACCACGGAGGAGATCAGGTTGGCCACCGATGACTTCTCGGACCGCCTCATGTTGAAGTCCGGTGGTGCCTACTCGACTGATGTTTATAGAGGAAAGATCAATCATTCCACTGTAGCCATCAAGATACTCACTTCCAGTCATGCGTTGTCCCCACAAGAATTCCAAGCTAAGGTGAGACTTCTTGTGGGTATTCGACATCCTCACGTGGTGGCTACGGTGGGCTACTGCACTAAGCTAAGATGCATAGTTCTGGAATATATGAATAATGGTAGCTTGAGGGACATGTTATTTTCTAAGAGAAGAAACTGGGCCTTACGGTGGCAGGACCGAATTAGGATAGCCACTGAAGTTGGTTCGGGCTTGGGCTTTCTTCATTCGGCCCAACCCAGGCCCTTCATTCACGGCCACCTAACTCCTTCCAGTATCCTTCTGGATCTCAATCTTGTTGCAAAGATCAAAGGTTTCAGGTCCAACGAAGGCAACCCACAATCCGACGTACATGCCTTTGGAGTTTTGATCATGCATCTCCTAACAGGAAGAAACTGGGTGGGCCTAGTTGAGGAGGAAGTGATGATGATGGGCGAATCTTTAGCCAGGGTTCTAGATGAGGCCTCCGGGCCATGGCCATTGAATGTGGCCCAAAAACTAGCCGAGCTAGCAATGAAATGTATGGGCTTTTCCAATGGGCGAAAGCCCAAGGAAGGATTAAGTATTGAGAAGGTAATGGCGGAACTAAATGAGATCAGAAGAGAGGCGAACGAGGAAGGTGGGAGAGGAGACAACACTACAAGATTGAGTGGAGGAGTTGTAGATAAAGAAGAGTTGATGGATGTGCCAAAGGTGTTTCTTTGTCCCATCCTTCAGGAAGTGATGAAGAACCCACACGTGGCAGGGGATGGGTTTTCTTATGAATTAGAAGCAATAGAAGAATGGGTTGGTTCAGGGCATGATAGATCCCCCGTGACAAACACAAGGCTGCCTCACTTGTTCTTTACCCCTAATCACTCCCTTCGTTCCTTAATCAGGGACTGGCAAACCAAAAGATCCTCTGATTCCTCTGATTTTGCAAAGTAG 2574 0.4394 MRDSLVRPKMRKLGASVSNKYIEFSQTGELGKLETIKFMDSTTQTGKIFVAVSNDLQDGIKTLNWALNKWKSYPISVVILYVSHNTSKDHVNTPFGKLPARSVNDEMLPALRKQEQDKIDKLLSKYIAFCGKVPDEILEVDKCDESIQKRILDMIIGLEITKLVIGFSVMKPSWKSRGAISGLFYIHQHKPELCELFIICGGKQVFMRGHNDENITEDDNGVVVARIRDKITFKDWLEKMLPDRNNNMDSPEYSRSPLGSATCSSASLGSQNQWEIYLQEIETYFQDLLCSNTNNDEQIRLEHQDSDVSGISGMEPDDDDDVREQNNSMKPKERIEMLKGKLEEARRMVQLKRKEAKDQSDRHAKAEWAICLCNTRAQELEGKIKEEMNMKEELAKELEAETETIYETRRDIEESRKRLSSLLELQMELSNKLQISTQARSQAEIQLENAANTRSEMVADIDQLRRQRDVLYRRIEFCKDKDAIGMAARLSEPVFSFREYTTEEIRLATDDFSDRLMLKSGGAYSTDVYRGKINHSTVAIKILTSSHALSPQEFQAKVRLLVGIRHPHVVATVGYCTKLRCIVLEYMNNGSLRDMLFSKRRNWALRWQDRIRIATEVGSGLGFLHSAQPRPFIHGHLTPSSILLDLNLVAKIKGFRSNEGNPQSDVHAFGVLIMHLLTGRNWVGLVEEEVMMMGESLARVLDEASGPWPLNVAQKLAELAMKCMGFSNGRKPKEGLSIEKVMAELNEIRREANEEGGRGDNTTRLSGGVVDKEELMDVPKVFLCPILQEVMKNPHVAGDGFSYELEAIEEWVGSGHDRSPVTNTRLPHLFFTPNHSLRSLIRDWQTKRSSDSSDFAK 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1011 857 Coils Coil 738 758 - -
Lele52g1011 857 MobiDBLite consensus disorder prediction 306 325 - -
Lele52g1011 857 Coils Coil 335 362 - -
Lele52g1011 857 Pfam U-box domain 778 848 IPR003613 GO:0004842|GO:0016567
Lele52g1011 857 Coils Coil 447 481 - -
Lele52g1011 857 PANTHER OS02G0152300 PROTEIN 48 842 - -
Lele52g1011 857 CDD RING-Ubox_WDSUB1_like 782 823 - -
Lele52g1011 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 776 854 IPR013083 -
Lele52g1011 857 ProSiteProfiles Protein kinase domain profile. 514 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1011 857 Gene3D Phosphorylase Kinase; domain 1 488 586 - -
Lele52g1011 857 Pfam Protein tyrosine and serine/threonine kinase 526 655 IPR001245 GO:0004672|GO:0006468
Lele52g1011 857 ProSiteProfiles U-box domain profile. 777 851 IPR003613 GO:0004842|GO:0016567
Lele52g1011 857 SUPERFAMILY RING/U-box 773 849 - -
Lele52g1011 857 Coils Coil 377 411 - -
Lele52g1011 857 SUPERFAMILY Protein kinase-like (PK-like) 493 743 IPR011009 -
Lele52g1011 857 Gene3D Transferase(Phosphotransferase) domain 1 587 655 - -
Lele52g1011 857 Gene3D Transferase(Phosphotransferase) domain 1 656 758 - -
Lele52g1011 857 SMART Ubox_2 781 844 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1011 Lele-ChrLele52 6674687 6681329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1011 40 853 U-box Gene Family AT5G65500 45.466 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lele52g1011 PK_Tyr_Ser-Thr 2.1e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1011 52 6674687 6681329 Lele53g1035 53 19727919 19728905 CCT
Lele52g1011 52 6674687 6681329 Lele54g1019 54 16354308 16354598 CCT
Lele52g1011 52 6674687 6681329 Lele55g0442 55 2764992 2770366 CCT
Lele52g1011 52 6674687 6681329 Lele56g0427 56 3165848 3169457 CCT
Lele50g1046 50 6719117 6723794 Lele52g1011 52 6674687 6681329 hybridization