Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1008 ATGGAATCATTAGAGAAGCACAGAAGAGAGTTTTCCGGCGACGATCAGGGGTCGCCAAGAGGTATACTGGAAATCCCTGTTTCGGGCACAGAATCTGATCACAGCGGAAGCAGCAGCTACAGCTCAAGCTTGTCGGAGAAGTCATCGGAGGCTGAGAGAGTTAAAGTGAGGGAAGGGCTGGGACAGCCATGGAGGGCGATGATAGAGTCATGGAAGAAGAAGTCAGTTCGGAGAATATCGGCGATTTCATTACTTGCAGCGAGCTACGAGATGTCGAGGAAGAGCTTGAGGAAGAGGAGGATGGAAAGGATTCGAAGCGCAGAAGAAAGAATCAATCTGGGAGCGATACCTACAAAGCCTTCATGGAGGAACTTCGATTACGCAGAGCTCCAAGCTGCAACAGACGATTTCAATCCTGAGAACCTGATTGGACAAGGTGGGCATGCTGAAGTCTACAGAGGACGCTTACCGAATGGTCAACTTGTGGCAGTGAAGAGGCTAATGAAGAAAGAGAAGGAAAATGAGGACAGAGCGGGTGATTACTTATCAGAGCTAGGCATTATTGCCCACATAAACCACCCAAATACTGTGCGTTTGATTGGGTTTGGGGTCAACAATGGTTTCTACTTTGTGTTGCAACTAGCTCCCCATGGCAGTCTTTCTTCTCTGCTCTTTGGTTCTGAATGCTTGGAGTGGAAGATAAGGTTCAAGGTAGCTATTGGTGTGGCACAGGGCTTGGGATACCTGCATCATGATTGCCAAAGACGAATCATTCACAGAGACATCAAGGCCTCCAACATATTACTAAACGAAAATTACGAAGCTGAGATTTCAGATTTTGGACTTGCGAAATGGCTCCCGGAGAAGTGGACTCACCATGTTGTCTTCCCAATAGAAGGCACATTTGGGTATTTGGCTCCAGAGTATTTTATGCATGGAATTGTTGATGAGAAGACTGATGTATTCGCCTATGGGGTTTTGCTGCTGGAACTCATTACAGGTCGTCGTGCAGTTGATTCATGCAGCAAGCAAAGTCTTGTCCTCTGGGCAAAACCACGACTGGAAGAACACGATGTGAAGGAATTAGTAGACCCACGATTAGGAGAAGCTTATGATTGCATTGAATTGAAGAGGACCATGCTTACTGCTTCCATGTGTCTCCACCACTCATCCTCCCACCGTCCATATATGAAACAGGTAGTGCTGCTGCTGAAGGGTGAAGAGGGACTCGTTGATGTTAAGCAGAAATCAGTACCAACAAGATCCATCTTGTTAGATGCCAGTGACCTCGAAGAATATACTTGCTCTACTTACTTGAACGATCTCAATCGTCACAGGCAACTAGTCATGGAGTGA 1356 0.4668 MESLEKHRREFSGDDQGSPRGILEIPVSGTESDHSGSSSYSSSLSEKSSEAERVKVREGLGQPWRAMIESWKKKSVRRISAISLLAASYEMSRKSLRKRRMERIRSAEERINLGAIPTKPSWRNFDYAELQAATDDFNPENLIGQGGHAEVYRGRLPNGQLVAVKRLMKKEKENEDRAGDYLSELGIIAHINHPNTVRLIGFGVNNGFYFVLQLAPHGSLSSLLFGSECLEWKIRFKVAIGVAQGLGYLHHDCQRRIIHRDIKASNILLNENYEAEISDFGLAKWLPEKWTHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAYGVLLLELITGRRAVDSCSKQSLVLWAKPRLEEHDVKELVDPRLGEAYDCIELKRTMLTASMCLHHSSSHRPYMKQVVLLLKGEEGLVDVKQKSVPTRSILLDASDLEEYTCSTYLNDLNRHRQLVME 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1008 451 SMART serkin_6 137 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1008 451 Gene3D Transferase(Phosphotransferase) domain 1 216 418 - -
Lele52g1008 451 Gene3D Phosphorylase Kinase; domain 1 111 212 - -
Lele52g1008 451 MobiDBLite consensus disorder prediction 1 15 - -
Lele52g1008 451 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Lele52g1008 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Lele52g1008 451 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 216 418 - -
Lele52g1008 451 MobiDBLite consensus disorder prediction 30 47 - -
Lele52g1008 451 SUPERFAMILY Protein kinase-like (PK-like) 118 404 IPR011009 -
Lele52g1008 451 MobiDBLite consensus disorder prediction 1 54 - -
Lele52g1008 451 ProSiteProfiles Protein kinase domain profile. 137 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1008 451 Pfam Protein kinase domain 140 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g1008 451 PANTHER OS08G0249100 PROTEIN 12 418 - -
Lele52g1008 451 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 112 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1008 Lele-ChrLele52 6650440 6653842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1008 114 427 Trihelix Transcription Factor Family AT5G38560 41.231 2.03e-69 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lele52g1008 Pkinase 8.7e-40 CL0016