LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele52g0996	ATGCCTATCTATCTAAGTGTTATGGTTGTCACCTATCTTGAATTCTATCTTCATCATAACTGTGGTTTAGCCTTACCTTGCAGAGGAAACTTTCAAGTCATGGAGCCCAAACAAATCTTTTCCTGTCGAAACAGACCATACTCCATCTGGTGATACATAGATTCAGAGAGTTGTGGAATTCTTGATGTTACAAATCCTGCAACACAAGAAGTTGTGTCTCAAGTTCCTTTAACTACTTATGAAGAGTTCAAAGCTGCAGTTAAAGCAGCCAAGCAAGCTTTTCCGGCATGGAAAAACACTCCAAGCATCACTCGCCATCGTATCATGTTTAAGTTCCGAGAGCTTATCTATAGGGACATTGATAAGCTTGCCATGAATATCACCATAGAGCAGGGCAAGACTTTAAAAGGCGCTCAAAGAGATGTGCTCCATGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGTCCAATCTTCAAATGGGGGAATTTGTCCCTAATGCTTGTGATGGAATTGATACATACTGCATAAGAGAACCCCTTGGAGTTTGTGCTGGAATATGCCCTGTCAACTTTCCAGCAGTGATACCCTTGTGGATGTTCCCTATAGCGGTTGCATGTGGCAACACATTTATTCTCAAGCCATGTGAGAAGAATTCAGGGGCTTCAATGATACTTGCAGCACTAGCAATGGAAGCGGGTTTGCCAGATGGTGTATTAAACATTGTTCATGGTACCCATGAGATTGTGAATTACATATGTGATGATGAGGATATAAAAGCTGTATCATTTGTGGGTCCAGTTGTGGTAGGTTTGGCTGGAATGCACATATATGCCAGGGCTGCTGCTAGAGGGAAACCGGGAGAGGGATGCATGACCCTAAGCACAGCTATTTTTGTTGGAGGATCATTGCCATGGGAACAAGAACTTGTGCAACGTGCCAAAGTACTCAAAGTGAATGCAGGAACAGAGCCTAGCGCCGATCTTGGTCCAGTTATTAGCAAAGAGGCAAAGGATCAGATATGTAGATTAGTTCAGAGCAGTGTTGAAAATGGTGCAAGGCTACTGCTTGATGGAAGACATGTTGTGGTACCAGGATATGAGAATGGGAACTTTGTTGGCCCTACAATTTTATGCGATATTACAATCGACATGGAGTGCTACAAGGAAGAAGTTTTTGGACCAGTTCTTCTCTGCATGCAGGCTAATAACCTAGATGAGGCAATATCAATAATCAACATAAACAAGTATGGAAATGGAGCTACCATATTTACCACATCTGGTGTAGCTGCTAGGAAGTTCCAGAACGAGGTTGAGGCTGTACTGGTTGGAATCAATGTCACTGCTCCTGTTCCTTTGCCATTTTCTTCCTTCAGTGGTTCGAAGGCATCGTTTGCTACTGATATAAACTTTTGTGGAAAGGCAGGAGTTCAGTTTTATACCCAAATCAAAACAGTGGCACAGCAATGGAAGGATTCCCCAAGTCTTGGTGTTTTGCCTTCTGCAAGTCCAGCTGACACGGGTAGAACCAATCGACATGTCTCATCATCAGTGCCTCCACCCGACAGACACTCGCCTAGAGAAATAGCATCACAAATCATGCCTGTAGAATCTGAAAGTGATTCACCAGCACAAGGGGTGCAAATTTCCATTCCAGACACTACTGCCGAGATCACAACTGTGTCATCCGCTTCTCCAACAACTGACAAGGGTCTTGGAAAACCAGCCATGTCTCTGGTTCTGCCTTCATCGTCCAACAGAGACATGGAAAATCAGGACGTGTCACTGGCATTATCTCCTACATCTCAGAGAGACATGATGACGAGCCAGGGAGTGTCAGTAGCCACACCCCAGACATCAGAGAGGTTGTACTTTTCTAAATCATCACACTGGAATGAAGGCTCTTCTGCAACGTCTCAAAGGAGGGAAAGTATCTCATCCGCTTCTGATGGGAGTCATATACCCACTACATCTCGAAGGAATGATAATACATCATCAACATCTCAGCGAACAGATGCCGCCGCAGGTATGAAAGCAGAGAGGCCATACATGCCCTTATCACATAAAGTCGATAACATCATCGGTCCATCCCACAGGATCGATGCTACTATCCCTTCTACTTCTGCAAGTGTTGTGTATGTCCTTGCAGCATCTCATTTAAATGAGAACCTTGGTGGAACATTTGAAAGACCTGAACCCATGTTTACAACTTCTGAGAGGATGTATATGCCTGCAGCATCTCAAAGGACTGATATTGGCTTAGGTCCAACTTCAGAGAGGATGTACATTTCTGCAACATCTCATAGAACTGAAAGAATTAGCGCGCCTTCTCAGCTCGGCGATGCTTTGTCTCCGATGGTACAGAATATGCCGGCGAGTTCAGAGAGGTTATATATACCAGCTACATCTCAAAGTATGTATAATCGAGACTCAATAATTTCAATAGATGAATTTTCCAGCCAATCTGTGGCTCTGAATTTACCAAGATCTCAGAGGATGTAA	2499	0.439	MPIYLSVMVVTYLEFYLHHNCGLALPCRGNFQVMEPKQIFSCRNRPYSIWXYIDSESCGILDVTNPATQEVVSQVPLTTYEEFKAAVKAAKQAFPAWKNTPSITRHRIMFKFRELIYRDIDKLAMNITIEQGKTLKGAQRDVLHGLEVVEHACGMSNLQMGEFVPNACDGIDTYCIREPLGVCAGICPVNFPAVIPLWMFPIAVACGNTFILKPCEKNSGASMILAALAMEAGLPDGVLNIVHGTHEIVNYICDDEDIKAVSFVGPVVVGLAGMHIYARAAARGKPGEGCMTLSTAIFVGGSLPWEQELVQRAKVLKVNAGTEPSADLGPVISKEAKDQICRLVQSSVENGARLLLDGRHVVVPGYENGNFVGPTILCDITIDMECYKEEVFGPVLLCMQANNLDEAISIININKYGNGATIFTTSGVAARKFQNEVEAVLVGINVTAPVPLPFSSFSGSKASFATDINFCGKAGVQFYTQIKTVAQQWKDSPSLGVLPSASPADTGRTNRHVSSSVPPPDRHSPREIASQIMPVESESDSPAQGVQISIPDTTAEITTVSSASPTTDKGLGKPAMSLVLPSSSNRDMENQDVSLALSPTSQRDMMTSQGVSVATPQTSERLYFSKSSHWNEGSSATSQRRESISSASDGSHIPTTSRRNDNTSSTSQRTDAAAGMKAERPYMPLSHKVDNIIGPSHRIDATIPSTSASVVYVLAASHLNENLGGTFERPEPMFTTSERMYMPAASQRTDIGLGPTSERMYISATSHRTERISAPSQLGDALSPMVQNMPASSERLYIPATSQSMYNRDSIISIDEFSSQSVALNLPRSQRM	832

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele52g0996	832	MobiDBLite	consensus disorder prediction	503	517	-	-
	Lele52g0996	832	CDD	ALDH_F6_MMSDH	52	489	IPR010061	GO:0004491
	Lele52g0996	832	Pfam	Aldehyde dehydrogenase family	286	485	IPR015590	GO:0016491
	Lele52g0996	832	Pfam	Aldehyde dehydrogenase family	53	285	IPR015590	GO:0016491
	Lele52g0996	832	FunFam	Methylmalonate-semialdehyde dehydrogenase (Acylating)	275	458	-	-
	Lele52g0996	832	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	283	458	IPR016163	GO:0016620
	Lele52g0996	832	FunFam	Methylmalonate-semialdehyde dehydrogenase [acylating]	50	297	-	-
	Lele52g0996	832	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	51	282	IPR016162	GO:0016491
	Lele52g0996	832	MobiDBLite	consensus disorder prediction	534	568	-	-
	Lele52g0996	832	MobiDBLite	consensus disorder prediction	493	680	-	-
	Lele52g0996	832	SUPERFAMILY	ALDH-like	54	491	IPR016161	GO:0016491
	Lele52g0996	832	MobiDBLite	consensus disorder prediction	578	672	-	-
	Lele52g0996	832	PANTHER	MALONATE-SEMIALDEHYDE DEHYDROGENASE	52	285	IPR010061	GO:0004491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele52g0996	Lele-ChrLele52	6563007	6570319	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele52g0996	52	473	Aldehyde Dehydrogenase Gene Family	AT2G14170	66.667	0.0	635