Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0993 ATGGCAGTTCAACAACCTGAGTTTGAGCATCCAAGGAAGGCCTTTGGATGGGCAGCTAGGGACGCATCAGGGCTTCTCTCCCCTTTCAACTTTTCTCAAAGGGAAACCGGAGAGAAAGATGTAAGATTCAAAGTTATGTACTGTGGAATATGCCACTCCGACCTTCACATGCTCAAGAACGAATGGGGCATTTCCGTCTATCCACTTGTGCCTGGGCACGAGATTGCTGGTATTGTGACAGAAGTAGGAAACAAAGTAGAGAAACTCAAAGTTGGAGACAAGGTTGGTGTGGGATACATGGTTGGCTCCTGCCGATCATGTGAAAGCTGTTCCGACAACCTTGAGAACCAATGCTCTAAACATATACTTACTTCTGGTGCCAAGTATGTAGATGGCACAATCACATATGGAGGCTACTCTGATTTCATGGTTGCAGATGAGCATTTTGTGGTTAGAATTCCAGATGCATTGCCTCTTGATGCTGCAGCTCCTCTGCTCTGTGCGGGGATCACAGTGTATAGCCCTTTGAGATACTTTGGTCTCGACAAGCCAGGCCTGCATTTGGGTGTGGTTGGTCTTGGGGGCCTTGGCCATATGGCTGTTAAGTTTGCCAAAGCCTTTGGGGCTAAGGTCACTGTCATAAGTACATCTCTTGACAAAAAGAAAGAAGCCGTTGAACATCTTGGAGCTGACTCCTTTGTTGTTAGATTGCAGGAAGATCAGATGCAGGCTGCAATGGGGAGTTTGGATGGGATCATTGACACAGTCTCAGCGCCGCATTCTCTGGGGCCTTTGATTGGTTTGTTGAAGCCTAACCGAAAACTTGTATTGGTGGGTGCACCAGAAAAGCCTCTAGAGCTGCCAGTGTTCCCTTTAAACGCGGGAGACCCAAGAAATGGTTATTCCAGTTATTCCAATGTGAAACCAGACATAGAAGTTATTCCAGTTGATTACGTGAACACCGCAATGGAGCGTCTCCATAAAGCTGATGTCAAGTATCGTTTTGTGATTGACATTGCCAACACATTGAACCCAACAACAACCTCTTAG 1050 0.4657 MAVQQPEFEHPRKAFGWAARDASGLLSPFNFSQRETGEKDVRFKVMYCGICHSDLHMLKNEWGISVYPLVPGHEIAGIVTEVGNKVEKLKVGDKVGVGYMVGSCRSCESCSDNLENQCSKHILTSGAKYVDGTITYGGYSDFMVADEHFVVRIPDALPLDAAAPLLCAGITVYSPLRYFGLDKPGLHLGVVGLGGLGHMAVKFAKAFGAKVTVISTSLDKKKEAVEHLGADSFVVRLQEDQMQAAMGSLDGIIDTVSAPHSLGPLIGLLKPNRKLVLVGAPEKPLELPVFPLNAGDPRNGYSSYSNVKPDIEVIPVDYVNTAMERLHKADVKYRFVIDIANTLNPTTTS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0993 349 FunFam Cinnamyl alcohol dehydrogenase 168 314 - -
Lele52g0993 349 FunFam Putative cinnamyl alcohol dehydrogenase 6 310 339 - -
Lele52g0993 349 FunFam Uncharacterized protein 17 167 - -
Lele52g0993 349 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Lele52g0993 349 Pfam Zinc-binding dehydrogenase 195 292 IPR013149 -
Lele52g0993 349 Gene3D - 168 309 - -
Lele52g0993 349 Pfam Alcohol dehydrogenase GroES-like domain 39 152 IPR013154 -
Lele52g0993 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 296 IPR036291 -
Lele52g0993 349 PANTHER ALDEHYDE REDUCTASE 6 342 - -
Lele52g0993 349 Gene3D - 17 339 - -
Lele52g0993 349 CDD CAD1 15 338 - -
Lele52g0993 349 SMART PKS_ER_names_mod 24 337 IPR020843 GO:0016491
Lele52g0993 349 SUPERFAMILY GroES-like 21 185 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0993 Lele-ChrLele52 6532471 6534956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0993 12 345 Monolignol Biosynthesis Gene Families AT4G37990 65.903 2.32e-151 428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0959 49 6043863 6044875 Lele52g0993 52 6532471 6534956 hybridization
Lele50g1019 50 6497763 6499415 Lele52g0993 52 6532471 6534956 hybridization