Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0992 ATGGCACTACAACATTCTGAGTTTGAGCATCCGAGGAAGGCCTTTGGATGGGCGGCTAGGGACACATCTGGGCTTCTCTCCCCTTTCAACTTCTCTCGCAGGGAAACCGGAGAGAAAGATGTGACATTCAAAGTTATGTATTGTGGAATATGCCACTCCGACCTCCACATGCTCAAGAATGAATGGGGCAATTCCGTCTATCCCCTTGTACCTGGGCACGAGATTGCTGGTGTAGTGACAGAAGTGGGAAGCGAGGTAGAAAATTTCAAAGTTGGAGACAAGGTTGGTGTGGGATGCTTGGTTGGCTCCTGCCGATCATGTCAAAGCTGTTCCGACGACCTTGAGAATCAGTGCTCAAACCATATTCTCACATATGGTGCCAAGTACGTAGATGGCACTATCACATATGGAGGTTACTCTGACTTTATGGTTGCCGACGAGCATTTTGTGGTAAGAATTCCAGAAGCTTTGCCTCTTGATGCTGCAGCTCCTCTGCTCTGTGCCGGAATCACTGTGTATAGTCCTTTGAGGTACTTTGGTCTGGACAAGCCAGGCCTTCATGTGGGCGTGGTTGGTCTTGGTGGACTTGGCCATATGGCTGTCAAGTTTGCAAAAGCCTTTGGGGCTACGGTCACTGTCATCAGCACATCTCCTAACAAAAAGAAAGAAGCTATTCAATATCTTGGAGCTGACTCCTTTATTGTCAGCCGCGAGCAACATGAGATGCAGGCTGCAATGGGAACTTTGGATGGGATAATTGACACAGTTTCTGCACAACATCCTCTGGTGCCTTTGATTGGTCTGTTGAAGTCTAATGGAAAACTTGTGTTGGTGGGTGCACCTGAGAAGCCTCTTGAACTGCCAGTGTTCCCTTTACTAGCGGGGAGAAAGATGGTGGCTGGGAGTGGCATCGGAGGGTTGAAGGAGACACAAGAAATGATGGATTTTGCTGCAAAGCACAATGTGAAACCAGACATAGAAGTGATTCCAATGGATTACGTGAATACTGCAATGGAGCGTCTTCTTAAAGCTGATGTCAAGTATCGTTTTGTCATTGACATTGCCAACACGTTGAAGCCAACAACAACCTCTTAG 1095 0.4749 MALQHSEFEHPRKAFGWAARDTSGLLSPFNFSRRETGEKDVTFKVMYCGICHSDLHMLKNEWGNSVYPLVPGHEIAGVVTEVGSEVENFKVGDKVGVGCLVGSCRSCQSCSDDLENQCSNHILTYGAKYVDGTITYGGYSDFMVADEHFVVRIPEALPLDAAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHMAVKFAKAFGATVTVISTSPNKKKEAIQYLGADSFIVSREQHEMQAAMGTLDGIIDTVSAQHPLVPLIGLLKSNGKLVLVGAPEKPLELPVFPLLAGRKMVAGSGIGGLKETQEMMDFAAKHNVKPDIEVIPMDYVNTAMERLLKADVKYRFVIDIANTLKPTTTS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0992 364 Gene3D - 17 354 - -
Lele52g0992 364 SMART PKS_ER_names_mod 24 352 IPR020843 GO:0016491
Lele52g0992 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Lele52g0992 364 PANTHER ALDEHYDE REDUCTASE 7 357 - -
Lele52g0992 364 FunFam Uncharacterized protein 17 167 - -
Lele52g0992 364 CDD CAD1 15 353 - -
Lele52g0992 364 Gene3D - 168 324 - -
Lele52g0992 364 Pfam Zinc-binding dehydrogenase 195 318 IPR013149 -
Lele52g0992 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 323 IPR036291 -
Lele52g0992 364 FunFam Cinnamyl alcohol dehydrogenase 168 324 - -
Lele52g0992 364 Pfam Alcohol dehydrogenase GroES-like domain 39 152 IPR013154 -
Lele52g0992 364 SUPERFAMILY GroES-like 22 185 IPR011032 -
Lele52g0992 364 FunFam Putative cinnamyl alcohol dehydrogenase 6 325 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0992 Lele-ChrLele52 6527354 6528974 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0992 12 361 Monolignol Biosynthesis Gene Families AT4G37990 72.286 5.38e-176 491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0958 49 6037449 6039845 Lele52g0992 52 6527354 6528974 hybridization
Lele50g1018 50 6492514 6494160 Lele52g0992 52 6527354 6528974 hybridization