Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0980 ATGAAGGAATTGAATAACCAGAGCTTAAGACTTGTTATGGTTCATATCCTTTGCCTTCTTCTGTTCATCAGATCAGCTTTTGCAAGTGAAGGTTTTGTGAGCATAGCATGCTGTGCTGATTCAGATTATACAGATCCAAAGACTTCAGTAAATTACACATCAGATTTTAGTTTCTACCCAGATAAAGCAAGTTGCTTAGACACAATTAAGCCTGTGAAGAACCATGCAGGCCATGGAAAAGCAAGAGTGTTTGATATAGATAAAGGAAAAAGATGTTACAGCTTGCCAATACTTAAGAATAAAGTGTATCTGCTAAGGGGCACATTTCCATCTGATAAATCTCTAAGTGAATCTCCGAATTCCTCTTTTGATGTTACAATTAGGGTTGCCTTATTAGGTAGGGTAGAGAAACCACCTCAGGATGTGGAATTACTTGAAGGAATTTTCAGAGCTACAAAGAATTACACAGATTTCTGCTTGGTGAAGGATGAAGGAGGAAGTCCTTATGTTTCATTGATTGAACTGAGGCCGTTGGATGAAGAGTACCTACAGGATTATTCCCCTTCTAGTGTCCTAAAAGTGATCACAAGAAATAACCTAGGGGCCACCGGAGATGACATCAGGTACCCACTTGACCGAAGTGACAGAATCTGGAAAGCTACTTCAAGTTCGTCATTTTCTTCCACATCATTGAATGCAAACATTTCCAACCACAATGCTAACTCGACACCTCCTCTACAAGTCTTACGAACCGCTCTTATGCATTCTGAGCGATTGGAATTCATCCACAATGGCCTCGACCCTGGGAAATCCGAATACCGTGTGATTCTCCACTTTCTTGAATTGAACAAGAGCGTCGGAGTAGGCAAAAGGGTGTCTGATATCTACGTCAATGGTGTCATTAAAGACCCCAAGTTTGACATATTTTCTGGTGGATCGAACTACAGACAAGCTGTTTTGAACTTGTCGGCAAATGGTTCGCTGAATCTAACCTTGAGCAAGGCTTCTGGGTCTGAGAATGGACCGCTCTGTAATGCATACGAGATCCTGAAGGTTATCCCGTGGATGCAGGAAACCAACCAAACGGACTCTGAAGTGATGTTGAAGGTGAGAGAGAAATTTTTAGAGAATAACAGAGGAAATAAAGAACTGGAGAGTTGGAGTGGAGACCCTTGCATTCTGTCTCCATGGCAGCATGTAGGATGTGATCGTTTAAGTGGTCAACTTGTTATTACTAAACTGGATCTTTCTTCAAGTAATCTCCGAGGACCAATTCCTTCCAGTATCACTGAGTTGTCCAACTTAAAAATACTCAACCTGAGCTACAATAGCTTAACTGGGAATATCCCCTCATTTCTACCTTCATCTTTTCTTACATCAATAGATCTGAGCCACAATGATCTCACAGGATCGCTTCCATGGACCCTTCCCTTACTGCCAAACCTAAAGTTTTTGTACTTTGGCTGCAATAAGCGTATGAGCAAGGAGATTCCAACTTCCTTGAACAGCTTAGAAAATACAGATTATGGAAGTTGCAAACCTGGAGACCCAGGAATTTCACAAAAGCAAATCGTCATTGGGACTGTTACATGCGGATTTGTCCTGACCATTTTGGCTGCTGGAATTCTTTGTAGCTGCCATACAAGAGGAAAATTAGGGAAAACATCTGATGAAAAGGGATACCCAGCAACCACAAATTTAATTTTCTCTTTAACCAGTAAAGATGATTTCTTCGTAAAGCCAGTATCCATTCAAACATTCACCCTGGAATACATAGAGGCAGCCACACAAAACTACAAAACTTTGATTGGTGAAGGAGGCTTTGGTTCTGTTTACCGTGGCACTCTAGATGATGGCCAAGAAGTAGCAGTGAAGGTCCGTTCAGCCACATCAACTCAGGGAACTCGCGAATTCGACAACGAGGTTAACTTGCTCTCTGCTATACGGCATGAGAACTTGGTTCCTCTTATTGGTTACTGTTATGAAAAGGATCAACAAATTCTGGTGTATCCTTTTATGGCTAATGGTTCTTTACAAGATAGGCTGTATGGTTTGTCATATCTTCATACGTTTTCGGGACGTTCTGTTATACATAGAGATGTCAAATCGAGCAACATACTTCTGGATCACAGCATGTGTGCCAAGGTAGCAGACTTTGGTTTCTCAAAATATGCCCCTCTGGAAGGAGACAGTTGTGCTTCTCTTGAAGTAAGAGGAACTGCAGGATACATGGACCCTGAGTACTATACAACCCAGCAATTATCTGCAAAGAGTGATGTCTTTAGCTTTGGCATGGTTCTACTAGAAATTCTGACTGGCCGGGAACCTCTCAGCACGCGAAGACCGCGGGATGAGTGGAACTTGGTGGAATGGGCTAAACCGTACATAAGGGCGTCGAAGATCGATGAAATTGTGGACCCTAGCATCAAGGGAAGATATCATGCAGAGGCCATGTGGAGAGTAGTGGAAACAGCACTAACATGTATTGAACCATTCTCAGTGCATCGACCAATCATGGCTGATATTGTTCGTGAGTTGGAGGATGCTCTGATTATAGAAAACAATGCATCAGAATACATGAAGTCCATAGAAAGCCTTGGAGGATCAAATCGCTATTCCATTGTGATGGAGAAGAAGATGGCAGCCCCATCTCCATCTACACCAGAATCAACCGTCTTGCCCAAAACCATGTCTCGCCCGCAGCCCAGATAG 2712 0.4251 MKELNNQSLRLVMVHILCLLLFIRSAFASEGFVSIACCADSDYTDPKTSVNYTSDFSFYPDKASCLDTIKPVKNHAGHGKARVFDIDKGKRCYSLPILKNKVYLLRGTFPSDKSLSESPNSSFDVTIRVALLGRVEKPPQDVELLEGIFRATKNYTDFCLVKDEGGSPYVSLIELRPLDEEYLQDYSPSSVLKVITRNNLGATGDDIRYPLDRSDRIWKATSSSSFSSTSLNANISNHNANSTPPLQVLRTALMHSERLEFIHNGLDPGKSEYRVILHFLELNKSVGVGKRVSDIYVNGVIKDPKFDIFSGGSNYRQAVLNLSANGSLNLTLSKASGSENGPLCNAYEILKVIPWMQETNQTDSEVMLKVREKFLENNRGNKELESWSGDPCILSPWQHVGCDRLSGQLVITKLDLSSSNLRGPIPSSITELSNLKILNLSYNSLTGNIPSFLPSSFLTSIDLSHNDLTGSLPWTLPLLPNLKFLYFGCNKRMSKEIPTSLNSLENTDYGSCKPGDPGISQKQIVIGTVTCGFVLTILAAGILCSCHTRGKLGKTSDEKGYPATTNLIFSLTSKDDFFVKPVSIQTFTLEYIEAATQNYKTLIGEGGFGSVYRGTLDDGQEVAVKVRSATSTQGTREFDNEVNLLSAIRHENLVPLIGYCYEKDQQILVYPFMANGSLQDRLYGLSYLHTFSGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPLEGDSCASLEVRGTAGYMDPEYYTTQQLSAKSDVFSFGMVLLEILTGREPLSTRRPRDEWNLVEWAKPYIRASKIDEIVDPSIKGRYHAEAMWRVVETALTCIEPFSVHRPIMADIVRELEDALIIENNASEYMKSIESLGGSNRYSIVMEKKMAAPSPSTPESTVLPKTMSRPQPR 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0980 903 PANTHER OS07G0107800 PROTEIN-RELATED 33 853 - -
Lele52g0980 903 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Lele52g0980 903 ProSiteProfiles Leucine-rich repeat profile. 434 456 IPR001611 GO:0005515
Lele52g0980 903 MobiDBLite consensus disorder prediction 879 903 - -
Lele52g0980 903 Pfam Malectin-like domain 40 352 IPR024788 -
Lele52g0980 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Lele52g0980 903 Gene3D Ribonuclease Inhibitor 359 513 IPR032675 -
Lele52g0980 903 Gene3D - 193 352 - -
Lele52g0980 903 MobiDBLite consensus disorder prediction 884 903 - -
Lele52g0980 903 SUPERFAMILY Protein kinase-like (PK-like) 577 846 IPR011009 -
Lele52g0980 903 Gene3D Phosphorylase Kinase; domain 1 569 672 - -
Lele52g0980 903 ProSiteProfiles Protein kinase domain profile. 597 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0980 903 FunFam Leucine-rich repeat receptor-like kinase 363 473 - -
Lele52g0980 903 Gene3D Transferase(Phosphotransferase) domain 1 673 866 - -
Lele52g0980 903 FunFam Nodulation receptor kinase 562 672 - -
Lele52g0980 903 SMART serkin_6 599 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0980 903 Pfam Protein kinase domain 600 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0980 903 Pfam Leucine rich repeat 412 468 IPR001611 GO:0005515
Lele52g0980 903 SUPERFAMILY L domain-like 386 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0980 Lele-ChrLele52 6445866 6451491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0980 9 853 Receptor kinase-like Gene Family AT1G67720 33.666 4.54e-130 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele52g0980 Malectin_like 2.4e-46 CL0202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0944 49 5943934 5949527 Lele52g0980 52 6445866 6451491 hybridization
Lele50g1003 50 6396700 6402342 Lele52g0980 52 6445866 6451491 hybridization